barSeed - Barley Seed Development Database

Probe CUST_31159_PI390587928

Source Contig U35_8403

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31159_PI390587928	Hv_44K_v2	GTTGAAACGATGTCTTGTCACTCCAATACTCTGAACTCTTCTAATGTTGCTTGAACTGTT	715	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16596.1	2324	7e-23	2228 - 2287	98	59 / 60	plus	ABC18976
MLOC	AK360496	2831	3e-21	2764 - 2823	97	58 / 60	plus	ABC18976 ABC26649
JLOC1	JLOC1_11438.1	2663	4e-23	2587 - 2646	98	59 / 60	plus
Harvest21	ABC18976	779	3e-25	4 - 63	100	60 / 60	minus	ABC18976
Harvest35	U35_8403	778	3e-25	716 - 775	100	60 / 60	plus

Contig Sequence (778 bp)

>U35_8403 778 Hv_44K_v2
CATCAGCACTCACCAGTCTTGCATACCTGAACATTAATTTGACTGAAGCAACAGAGGAGG
ATCTGCGGATGCTGGGAGAGATGCCGGCCTTACTTTGTCTGAGTATAACATTCAATACTT
TCCAAAAAGAAAGGCTTGCGGTACAAGGCATTGCGTTTCCGTGTTTGAAGGAATTATACC
TAATCTGCTGGGAAAGTGCAATTTACTTGACGTTTGAAGAAGGGGCACTGCCAAAGCTGG
AGAAGCTTGTGGTGCCGTTTTTTTGTTTCAATGGCAGAAGAGTATGGGTTCTACTTGGGA
CTTGGCCACCTCCCGTGTCTGAGAGATGCCATATTTACTCTTTGCAATTATGTAGGCACA
TCTTCCGTAAGCTGCTCTGCTGCAGCTGATTGTATAAGGAGCGAGGCAAATAGCCATCCC
AATCATCCCAGGTTATCTATCCGGGACCGAGTTGGAAGAAAGCTACACTGACGAGGAAGA
GAGCTAGCTGTCAGGGAACTGTTATATCATGACATTTGACTACCAATGCAAGAGGGAATC
TTCTGTTAAACGCAAGGGCATCACAGAGGAAGTGGTGTTAGTTGCTCTACTACATGGTAC
TATTTGCTTTACAGGGAATACTGTAATTTAAGAATTTGTTGCATTTATTACTATTTATAA
GAATTAGTGTGTGTGTGTACTTGTGTAACTTAATTTGATGTTAGGTCTCATAAGAGTTGA
AACGATGTCTTGTCACTCCAATACTCTGAACTCTTCTAATGTTGCTTGAACTGTTGTT

Homology of Contig U35_8403 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None