barSeed - Barley Seed Development Database

Probe CUST_3114_PI390587928

Source Contig U35_6580

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3114_PI390587928	Hv_44K_v2	GGGTAATGAAAATGTTGGAGTGGCACTTTTGACGTACCCTGTTCTAATGGCTTCTGACAT	556	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68915.2	2251	2e-24	645 - 704	100	60 / 60	plus	ABC13378 ABC13379
MLOC	MLOC_68915.1	1286	6e-24	660 - 718	100	59 / 59	plus	ABC13379
MLOC	MLOC_68915.3	1235	6e-24	655 - 713	100	59 / 59	plus	ABC13379
JLOC1	JLOC1_45643.1	2253	8e-25	642 - 701	100	60 / 60	plus
JLOC1	JLOC1_45643.2	2250	3e-24	640 - 698	100	59 / 59	plus
Harvest21	ABC13397	719	3e-25	557 - 616	100	60 / 60	plus
Harvest21	ABC13396	730	1e-24	548 - 606	100	59 / 59	plus
Harvest35	U35_6580	719	3e-25	557 - 616	100	60 / 60	plus
Harvest35	U35_6579	537	1e-24	354 - 412	100	59 / 59	plus

Contig Sequence (719 bp)

>U35_6580 719 Hv_44K_v2
GCCGGAGCGGAGCAGAGCAGAGCAGAGCACCGGGAGCCAACGCCATGAGCCGCGCGCTCC
TCTCCCACATCCTCCACCGCCCGCCTCTCCTCGCGTCGAGGAGTGGCGTCCGAGGAGGAG
CGCTGCCTTCCCGCCTCCGCGCTCTCCGCCTCAACTGCAGCGGGGCTGAAGCTGCCGCCC
CAGCCGATGAGGCGCCTGCTCCCCCGGCGAGGAAGAAAAGAGTAGTTTCTGGTGTACAGC
CAACAGGAATGGTGCACCTTGGAAATTATCTTGGTGCTATTAAGAACTGGGTTGCACTTC
AGGATTTGTATGAGACATTCTTTTTCATTGTGGACCTGCATGCGATTACCTTGCCGTATG
ATGCACCGGAGCTATCTAAAGCTACAAGAAGCACCGCTGCAATTTATCTGGCATGCGGCA
TTGATAGTTCCAAGGCTTCTATTTTTGTACAGTCTCATGTCCGTGCTCATATCGAGCTGA
TGTGGCTACTGAGCTCTTCGACTCCTATTGGTTGGCTGAACAAAATGATTCAGTTCAAAG
AGAAGTCACGCAAGGCGGGTAATGAAAATGTTGGAGTGGCACTTTTGACGTACCCTGTTC
TAATGGCTTCTGACATCCTTCTGTACCAGTCCGATTTGGTACCTGTTGGTGAAGATCAGA
CACAACATTTGGAATTAACTCGTGAAATTTCTGAACGTGTAAATAATCTATATGGTGGA

Homology of Contig U35_6580 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g54020.1	400	3e-127	protein\|tRNA synthetase, putative, expressed
Brachypodium v1_2	Bradi2g49520.2	358	5e-135
Arabidopsis v10	AT2G25840.2	412	5e-90	\| Symbols: OVA4 \| Nucleotidylyl transferase superfamily protein \| chr2:11021924-11025158 FORWARD LENGTH=412