barSeed - Barley Seed Development Database

Probe CUST_31128_PI390587928

Source Contig U35_8434

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31128_PI390587928	Hv_44K_v2	GCATTTTACAAAATGTCAAAAATATAGAAACCAGTTGATGATTTTGCAGACCTGACGAGG	793	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363879	2668	2e-24	2096 - 2155	100	60 / 60	plus	ABC06161 ABC11355
MLOC	MLOC_80295.2	2488	2e-24	1180 - 1239	100	60 / 60	minus	ABC41013
MLOC	MLOC_80294.1	948	2e-24	141 - 200	100	60 / 60	minus	None
MLOC	MLOC_28405.1	354	2e-24	29 - 88	100	60 / 60	minus	None
JLOC1	JLOC1_53463.1	2713	8e-25	1451 - 1510	100	60 / 60	minus
JLOC1	JLOC1_53462.4	2003	8e-25	1204 - 1263	100	60 / 60	plus
JLOC1	JLOC1_53462.3	1824	8e-25	675 - 734	100	60 / 60	plus
Harvest21	ABC22981	854	3e-25	794 - 853	100	60 / 60	plus
Harvest35	U35_8434	854	3e-25	794 - 853	100	60 / 60	plus

Contig Sequence (854 bp)

>U35_8434 854 Hv_44K_v2
GATAAGGTCCAAGTAGTGTATGCTTAAGAGAAATTTTGGAGTGCATATCCTCTGTTTCTC
AAACGGGGGAATATGTCGATTTGCCATTGTCTTGTCATTAGAAATCCTGAATTTGGATCT
TTCTTTTACCTAAAGTCCTTGCTGCAGAGGTTACTGTTCGACAAACCTACTTCCTCTAGC
TAATTGTAACTGTTAACGAAAGATACTTACTGTTCTTCTGCAGGAGAATGGTCAGGAGTC
TGAACCAATGAATGACCGTGAGGGGAGACATTACACATGCTACCTACCAGTCAAAGAAAC
CAAGACCATGAAGTCGATTGTCCCACAGAATGCAACCAATGTTATCATAGAAAGCGAACG
GAAAGTTTACAGTCTGCTATGCTTGACTACAGACATACATTTAAGTTCACCATACTGAAG
TTCATATGGCTTAGGTGTAGTAGTGCAGTAAATCCTTAATCCAGCATTACACGTGTTCTA
GGAAAAATTATAAAACCAACACATAACTCTTGAAACAAAAACGATGGACCAGATCTGATT
TATCTTTTCTGATTTGTTTGTGAAACTGTAGACAAGAGTTGGTGTCTGTTTTCATGTGCT
TTCTTGTGCATATCAGCATATGTTTTCTGGCCCTGGAACAAACAAGCATATGATGATTTA
ATTATTTGACTGAATCTAGACCGTATAATAAGGTCCAAGTAGTGTATGCTTAAGAGAAAT
TTTGGAGTGCTTACTGCCAAGTATTTGTTTCAAAAAACACCCGTCAACATCTAAACTCAA
AAGACTTAGTTTTGCATTTTACAAAATGTCAAAAATATAGAAACCAGTTGATGATTTTGC
AGACCTGACGAGGT

Homology of Contig U35_8434 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None