barSeed - Barley Seed Development Database

Probe CUST_31032_PI390587928

Source Contig U35_3455

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31032_PI390587928	Hv_44K_v2	ATTGCCTACACCATCACCGCTTCCATCAGCTTCAGGGCGATTCTGAAGGCCAACTGCTAC	583	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365200	1834	2e-24	605 - 664	100	60 / 60	plus	ABC09971
MLOC	AK366631	1798	2e-24	457 - 516	100	60 / 60	plus	ABC09971
MLOC	MLOC_62449.1	1129	2e-24	90 - 149	100	60 / 60	minus	ABC09971
JLOC1	JLOC1_40870.1	965	8e-25	817 - 876	100	60 / 60	plus
Harvest21	ABC09972	703	1e-23	584 - 643	98	59 / 60	plus
Harvest35	U35_3455	703	3e-25	584 - 643	100	60 / 60	plus

Contig Sequence (703 bp)

>U35_3455 703 Hv_44K_v2
TCACAACAGAGCCTCTTTTCCTCGTCCTCTCGATCCACCCACGTATCAGTGCCTCCTCTA
ACAACAGCTGGTCGATCCAGCCACCATTCGCCAAGTAGTATTCCAGTCAGTTCAGCGAGT
CCGTCTCCGTGATACGATTCCCCTTCCGCGCTCGCCGCCGGCCGGCCGGGAAGGGAAGGG
AGCGGGATTTCCCCCGACGATGGCGTTCGGCGAAGGGGGAGGCGACGCCACGGCCCCTCT
CATCTCTTCCGACGGGCCGAAGCGCCATCCCAACGTCGTCAGGAACGGGAACGAGTGGAC
GGCGGCGGCGCACGTGATCACGGCGGTGATCGGGTCCGGCGTGCTGTCGCTGGCGTGGAG
CATGGCGCAGCTGGGGTGGGTGGCCGGACCGGGCATGATGGTGGTGTTCGCCTCGGTGAC
GGCGCTGCAGTCCACCATCTTCGCCGACTGCTACCGGTCGCCGGACCCGGAGCACGGCCC
GCACCGCAACCGCACCTACGCCCACGCCGTCGAGCGCAACTTAGGTAGCAGCAGTGCGTG
GGTCTGCCAATTGTTGCAGCAAACAGCCTTGTTCGGCTACGGCATTGCCTACACCATCAC
CGCTTCCATCAGCTTCAGGGCGATTCTGAAGGCCAACTGCTACCACGCGCACGGGCACGA
CGCGCCCTGCAGCTTCGACGGAAGCTACTACATGCTCATGTTC

Homology of Contig U35_3455 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g39489.2	230	9e-93	protein\|amino acid transporter, putative, expressed
Brachypodium v1_2	Bradi5g13050.1	468	6e-110
Arabidopsis v10	None