barSeed - Barley Seed Development Database

Probe CUST_30979_PI390587928

Source Contig U35_4225

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30979_PI390587928	Hv_44K_v2	GTACTGCTCCTCGTATATACTTCATGTAGTCGTACCTAAAGATGGTCTGTCGTTTCGTGC	2071	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.039	1.792	1.373	0.859	0.275	0.318
Raw	1961.438	5238.837	3495.043	3502.003	389.676	490.842

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_22679.1	1779	8e-25	1605 - 1664	100	60 / 60	plus
Harvest21	ABC09725	1158	3e-25	1065 - 1124	100	60 / 60	plus	ABC09725
Harvest35	U35_4225	2153	3e-25	2072 - 2131	100	60 / 60	plus

Contig Sequence (2153 bp)

>U35_4225 2153 Hv_44K_v2
ACTTTCGATATCCAACATACCTTTTGGGTCGAAGAGGTTCATAGCTCACTTGACTATGGC
TTATGTTTTCACATTTTGGACATGCTATGTTCTGTTGCGGGAGTATGAAATAGTCGCAAC
GATGAGATTGCGCTTTCTTGCATCAGAGAAACGCCGCCCAGACCAGTTCACAGTCCTGGT
GCGGAATATACCACCTGATCCGGATGAATCAATTGGTGAGCTTGCAGAGCATTTCTTCCT
TGTGAATCATCCTGATCACTATCTAACACATCAGGTTGTTTATAATGCAAATAAGCTCGC
TAACCTGGTCAAAGAGAAGAAGAAGATGCAGAATTGGCTCGACTTCTATCAGCTGAAGTA
TGAAAGAAATGCAAGTAAAAGGCCTACTGTTAAGACTGGTTTTCTTGGATGTTTTGGTTC
CAAAGTGGATGCTGTTGAACACTACACATCGGAAATTGAGAGGATAGAAAAGGAAGAAGC
TGAAGAACGTGAAAAGATCGTGAAGGATCCCAAGTTAGTTGTTCCAGCAGCATTTGTCTC
CTTTAGATCAAGGTGGGGTGCAGCAGTATGTGCTCAGACACAACAAACCAGTAATCCGAC
GGTTTGGTTGACTGAGTGGGCTCCAGAACCTCGTGATGTGTACTGGGATAATTTGTCTAT
TCCAATTGTTCACCTTACAGTTAGAAGGTTGATAATTGCGGTAGCATTCTTCTTTCTGAA
CTTCTTTTATGTAATCCCAATCGCATTTGTTCAGTCCCTTGCAAATATTGAAGGGATTGA
GAAGGCAGTTCCATTTCTGAAGCCTATAATTGAAATGCCTGCTATCAAATCATTCATCCA
AGGATTCCTTCCTGGAATTGCTCTGAAGATCTTCCTTATACTGCTCCCAAGCATATTAAT
GTTTATGTCAAAGGTTGAAGGATTGACATCTGTGTCTTCACTGGAAAGAAGATCTGCATC
GAAGTACTATANCTTCTTATTCTTTAATGTATNNCTGGCAAGCATCATTGCTGGATCTGC
TTTGGAGCAGCTACAGACCTATCTTCATCAGTCAGCAAATCAAATACCAAGGACAATCGG
TGTAGCAATTCCAATGAAGGCAACCTTTTTCATAACGTATGTAATGGTCGATGGATGGGC
TGGGGTAGCTGGTGAAATATTGAGATTGAAGCCATTGGTTATCTTCCACTTGAAAAACTT
TTTCTTGGTCAAGACTGAGAAAGACAGAGAAGAGGCGATGGACCCCGGAAGTATTGGTTT
TGACTCGAATGAACCCCAAATACAGCTCTATTTCTTACTTGGTCTCGTCTATGCTGTGGT
GACGCCATTTTTGCTTCCATTCATATTGGTATTCTTTGTGCTCGCATACGTGGTCTACCG
CCATCAGATAATAAATGTGTACAATCAAGAATATGAGAGTGCAGCTGCATTTTGGCCAAG
TGTTCATGGGCGTATAATCACAGCATTGATCGTATCACAGCTGCTTTTCCTTGGATTATT
AAGCACAAAAGGCGCAGGCCAGTCAACACCAGTGCTCCTTGTTCTTCCTGTGGTGACCTT
TTATTTCCACAAATACTGCAAGAACCGCTATGAACCTGCTTTTGTAGAATATCCATTGCA
GGAGGCAATGAGGAAAGACACCCTAGAACGTGCGCGAGAGCCAGGGTTTGACCTGAAAAC
GTACCTGGCAAGTGCCTACATCCACCCGGTTTTCAAAGGCGAGGACGATGAGAAATTCTC
CATGATGGATGAAGGGGAGGCAGACCAGGTCCTCGTGGCAACGAAGCGGCAATCGAGACG
GAACACCCCTGTCCCGAGCAGAAACAACGGTTCAGAAGCGCCTTCTATGCCTGAAATTGT
AAATGATCAGCGACTATGATAGAGTTTGGCCGTGTACATTGAATAAAGAACACAGTAATG
CGTTTCATCATTGCTTTTTTCCTTTCAGTTGTTGGTATTTCTTTTTCACAATATAAAGGA
GCTATGACGAATATTATTGGACTAGACGTAGTATGTGTGGGCCTTTGCGTTAGGAGTACA
AATCGTTTACTTGTCCTTCAAGGACTCTCATGTACTGCTCCTCGTATATACTTCATGTAG
TCGTACCTAAAGATGGTCTGTCGTTTCGTGCTTTTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_4225 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g35050.4	704	protein\|early-responsive to dehydration protein-related, putative, expressed
Brachypodium v1_2	Bradi2g40490.3	769
Arabidopsis v10	AT4G22120.1	771	ERD (early-responsive to dehydration stress) family protein \| chr4:11715976-11719144 REVERSE LENGTH=771