- Probe CUST_30975_PI390587928
- Source Contig U35_4230
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30975_PI390587928 | Hv_44K_v2 | GTTCTCTACGCGTTTAGGTTTGTGAGTTTGTATTCATATATCACGCGTTGTTATGTTTTT | 618 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.944 | 0.958 | 0.698 | 0.573 | 1.304 | 1.161 |
| Raw | 3.406 | 5.693 | 3.236 | 4.180 | 3.827 | 3.641 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_53898.1 | 980 | 2e-24 | 249 - 308 | 100 | 60 / 60 | minus | ABC12634 ABC36932 |
| MLOC | AK354010 | 1071 | 7e-23 | 972 - 1031 | 98 | 59 / 60 | plus | ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00102 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00570 ABC00657 ABC00660 ABC00676 ABC00684 ABC00787 ABC00971 ABC12634 ABC32138 ABC36932 |
| JLOC1 | JLOC1_34658.1 | 889 | 8e-25 | 183 - 242 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC12635 | 523 | 3e-25 | 423 - 482 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC12634 | 749 | 3e-25 | 632 - 691 | 100 | 60 / 60 | plus | ABC12634 |
| Harvest21 | ABC36932 | 348 | 6e-22 | 59 - 118 | 97 | 58 / 60 | minus | ABC36932 |
| Harvest35 | U35_4230 | 738 | 3e-25 | 619 - 678 | 100 | 60 / 60 | plus |
Contig Sequence (738 bp)
>U35_4230 738 Hv_44K_v2 ATCAATCATCATCATCATCAGCAGCAGCTGGTGTAGCAGCTAGCTTGTAAACGCAGGTAG CCAGCACCTCCGGCGCCATGGCCATGTCCAAGCTCGCGCTTGTCATTCTGGTGGCCACCT TCCTCGCTGGCAGTGGCACCCCCACCAACGGGGATTGTGAGTATCAGTTGAAGGTGAAGA CGGGGGACTGGCCTGGGGACGGCATGGACGAAGCATTCGTGGTGTTTTGGTTGTTCCGCG ATAGCCAGGGCGGCGGCGGCCCCATGGTGTCACATGAGGAGGACGCCGCTGGCGTCAAGT TCGACCGTGGGAAGACCGACGAGTTCAGCTTCACGGACCGGAAATGCATCCGGCCGTGCC GCCTCGTCCTCAGCCTCGACACGTACGGCAGTTCCGGGGAAGGTGAAGAGTGGCACTGCC AGTCCGTCGACGTCACCGTCTCCGGGGACATCTCCTACTCCAAGTCGTTCCATGTGAATC AGTATGTTGAGTCTGGCAGGCCCATCGAGATCGACGAGTGCGACGACGCCGCGGCGGCTT GAGCCCGTCCGTCCGTCCGTCTGTACGTGTGATTGCATGTGCGTGTTCCCGCGCTCTCCC TGCTGCCAAGATCGTGTTGTTCTCTACGCGTTTAGGTTTGTGAGTTTGTATTCATATATC ACGCGTTGTTATGTTTTTTTCTCAGTTAAAATAATAATAAGCGGGATGAGTTTTCGTTCA AAAAAAAAAAAAAAAAAA
Homology of Contig U35_4230 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |