barSeed - Barley Seed Development Database

Probe CUST_30970_PI390587928

Source Contig U35_4235

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30970_PI390587928	Hv_44K_v2	TGCTTCGGTAGCACTTTCAGGTCTACGGAAGTAAGAAACGAAATCTAGATACTTTAGTTT	1077	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77860.4	1441	2e-24	1306 - 1365	100	60 / 60	plus	ABC11175 ABC13565
MLOC	MLOC_77860.5	1690	2e-24	1551 - 1610	100	60 / 60	plus	ABC11175 ABC13565
MLOC	MLOC_77860.6	1693	2e-24	1554 - 1613	100	60 / 60	plus	ABC11175 ABC13565
MLOC	MLOC_77860.1	1441	2e-24	1302 - 1361	100	60 / 60	plus	ABC11175 ABC13565
MLOC	MLOC_77860.2	1438	2e-24	1299 - 1358	100	60 / 60	plus	ABC11175 ABC13565
JLOC1	JLOC1_51904.3	1301	8e-25	1087 - 1146	100	60 / 60	plus
JLOC1	JLOC1_51904.2	1513	8e-25	1299 - 1358	100	60 / 60	plus
JLOC1	JLOC1_51904.1	1510	8e-25	1296 - 1355	100	60 / 60	plus
Harvest21	ABC49545	585	3e-25	90 - 149	100	60 / 60	minus
Harvest21	ABC11175	699	3e-25	110 - 169	100	60 / 60	minus	ABC11175
Harvest21	ABC11174	1169	3e-25	1078 - 1137	100	60 / 60	plus
Harvest21	ABC50557	296	6e-22	1 - 57	98	56 / 57	minus
Harvest35	U35_4235	1245	3e-25	1078 - 1137	100	60 / 60	plus

Contig Sequence (1245 bp)

>U35_4235 1245 Hv_44K_v2
GTGCCGCGCTATCATCAGGATAACGTCTCCTCCCTGCCGAGGCGCTCCGTCCTCTCCTCT
TTCCCGGCCACCGGCGACGACAGGGCGGCCATGGCGGCGGCGCTGCTCTCCCCGGCTTCC
CCCCTCCCTCGCTCCTCCTCCTCCGCGCTCCACCCCAGGAGCAAGGGCGCGGCGGGTGGT
GCAGCAGGGTGCGCTCCGCCGTCCAGGAGGAGGGCCGTCTCGTGCTCGTGCGCGCCAGAT
TCGTGGAGCCGCGGGCTGGAGAGGAGGCAGCTCGTGCTCTCCGGCCTCGCCTCCTCCTTC
GCAATCGTCCTACCGATTTCAGTAGTAGAATCGTGCGCTGCTGCTGCTGCTGCTGCTACC
GAGCTGGAGGACGGCGGCGTGAAGATGGCCATGCTGGTAGACGAGACCAACGCCTACTCT
TTTCTCTACCCGGTTCAGCTGCCAGGGAAGAAAACCTCCTTCAGATGGGTAGAGTCCAGG
AAATCGGAGCGGTATTCGTCCGCGGCGCCACTATCTCCTGATGCACGGCAACGCATCGTA
TCGGAGCGCCTCGACATGATAAACAATGCCGTCATCTCGGTCTCGATCGGGCCACCAAGT
TCACGCTTTCTACCTTCGAAAGACAAGACCACTTGGGCTGCAAAAGATGTCGCTGATTGC
GTTTTGTCTGACAAATCTTCCTTGAAGGTAACAGCAAGCCAGCGAAAGGCAGAGAGTTCT
GTCCTTGATGCACACACTGCAGATGTTGATGGAGAGCCATACTGGTATTACGAATATATT
GTTCGGAAATCACCAACAAAATCGGCACCAGAACCAAATCTGTTTCGGCACAGTGTAGCA
TGTACTGCTGAGCGAGACGGCTTTTTGTACTCGTTAAATGCCTCCACTCTCAGCAAGCAG
TGGGAATCTATGGGACCTTTGCTACAAAAGGCCGTGGCATCCTTTCACCTCCTCCCCCCA
ACAGAGAAATATGTTCCTCCTTACCAGGATCCGTGGAGGTTTTGGTGATGTGACCTTGTT
CGTGCATTTTTGGCGATCCAATGACTTAATGTTTTACACCATGTTTCTTGTAATAGATGC
TTCGGTAGCACTTTCAGGTCTACGGAAGTAAGAAACGAAATCTAGATACTTTAGTTTTTT
TGCCAATCTACTACAAGTTGATTGTTTTTAGTATTAAGTGTCAAACGTACCCGATTGAAA
TAAACAATACAACAACCATTGTTAGTTTTTAAAAAAAAAAAAAAA

Homology of Contig U35_4235 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g43070.1	316	3e-133	protein\|psbP-related thylakoid lumenal protein 4, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi2g43680.1	302	4e-152
Arabidopsis v10	AT5G11450.1	297	2e-109	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein \| chr5:3654475-3656357 FORWARD LENGTH=297