- Probe CUST_30966_PI390587928
- Source Contig U35_4239
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30966_PI390587928 | Hv_44K_v2 | GGTAAAAGAGAACGACGATGAGGGTGCAATAGTAGCTCAACATCTCTTTCAAGCTAGGAG | 1456 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_12555.1 | 2558 | 2e-24 | 25 - 84 | 100 | 60 / 60 | minus | ABC10883 ABC12036 ABC36804 |
| JLOC1 | JLOC1_8428.1 | 2496 | 1e-23 | 2439 - 2496 | 100 | 58 / 58 | plus | |
| Harvest35 | U35_4239 | 1611 | 3e-25 | 1457 - 1516 | 100 | 60 / 60 | plus |
Contig Sequence (1611 bp)
>U35_4239 1611 Hv_44K_v2 AGTGTATCAACCATGGGAGGTACTGTGCACCTGACCCGGAACAGGATTTCAGCAAAGGGT ATGACGGGAAAGATGTGGTGGTTCAAAATTTGCGGCAAGTCTGTGTTTATAAAGTTGCGA AGGAGAATAAGAAGCCTTGGTTATGGTGGGACTACGTGACCGATTTTGCAATCCGCTGCC CAATGAAGGAAAAGAAGTATACTAAGGAATGTGCTGATGGAGTTATCAAGTCACTTGGAC TTGATCACAAAGCAATAGATAAGTGTATCGGTGATCCAAATGCCGATGAAGAAAATCCTG TGCTGAAAGCTGAACAGGATGCTCAGATTGGCAAAGGTGCTCGTGGTGATGTCACTATCT TACCAACACTGGTCATCAATAATAGGCAATACAGAGGGAAACTTGACAAAGGGGCAGTTC TTAAAGCACTTTGTGCAGGTTTCCAAGAAACTACTGAGCCTGCCGTTTGCTTGAGTGAAG ATATACAAACTAACGAGTGCTTGGAGAACAATGGTGGCTGTTGGCACGATAAGGCTACTA ACATATCTGCATGCAAGGATACTTTCCGTGGTAGAGTTTGCGAATGCCCGGTTGTCAAAG GTGTGAAATTTGTTGGTGATGGCTACACTCACTGTGAAGCTTCAGGATCTGGTCGCTGTG AGATTAACAATGGGGGATGTTGGAAAGAGACCAGGAATGGCCGGACACACTCTGCCTGCA CTGATGGTGGCTGTAAATGTCCAGATGGGTTCAAAGGTGATGGTGTCCACAAATGTATAG ATGTTGATGAGTGCAAGGAAAGGACTGCATGCCAGTGCAAGGACTGCAAATGCAAGAACA CGTGGGGAAGCTACGAGTGCGGGTGTGGTGGTGGCTTGCTGTACATGAAGGAGCATGATA CGTGCATAAGCAAAGATGCAGGAGCACGTGTAGGCTGGAATTTCCTATGGGTTGTATTGT TTGGCCTAGCGGCAGCAGGAATCGCAGTATACGCCGTGTACAAGTACAGGATCCGGAGCT ACATGGATTCAGAGATCCGCGCTATCATGGCGCAGTACATGCCCCTGGACAACCAAGGAG AGATCCCCAGCCATTCTCACCATATTGAGATGTGAAGAGCAGCAGCACAGGCAGTTTGTT TCAGCTCATGGTAAGGATGATTAGAGGAGGAGAAGAAGACTTGTCTTGCATATGTTGTGT GTAGCGCACCCAGTCCCAGTCGGACCATCCTGTAAATTCGTTGGTAGATCAAACTTGGAA GAGAAACACACTTGTCCTGAGTGGTGTGATCATCTCTTCCTTTTTCTTCTGTTTTTTAAT CAGAGGAGAGATTGTGCAAAACTCATGTCTTGTGTGCTTCTTTTTTGCTCTGTTCTCCGT TTTAACCCAAGATCATGATGATTCTCCTAAGTTATTAAGATGGATGTAAAGTAGTACCAC TTCAAGGTGTCTTGTTGGTAAAAGAGAACGACGATGAGGGTGCAATAGTAGCTCAACATC TCTTTCAAGCTAGGAGTATTATAATAATATAATAATTGCAGACCAACATCTCTTTCAAGC TAGGAGTATTATAATAATATAATAATTGCAGACCAAAAAAAAAAAAAAAAA
Homology of Contig U35_4239 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os11g02464.1 | 728 | 0.0 | protein|vacuolar-sorting receptor precursor, putative, expressed |
| Brachypodium v1_2 | Bradi4g44380.1 | 624 | 0.0 | |
| Arabidopsis v10 | AT3G52850.1 | 623 | 0.0 | | Symbols: VSR1, BP-80, ATELP, BP80, BP80B, ATELP1, ATVSR1, GFS1, VSR1;1, BP80-1;1 | vacuolar sorting receptor homolog 1 | chr3:19587999-19591690 FORWARD LENGTH=623 |