barSeed - Barley Seed Development Database

Probe CUST_30959_PI390587928

Source Contig U35_4246

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30959_PI390587928	Hv_44K_v2	AGAGGATAACTTGGTTTCGCTTGTACAGTTTGCTGAGATTTTATAGAGCATGTTAGTGTA	1041	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.402	1.490	1.050	0.859	0.358	0.369
Raw	679.835	1086.558	701.273	897.511	132.687	146.416

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34019.2	2546	2e-24	31 - 90	100	60 / 60	minus	ABC09454 ABC46784
MLOC	MLOC_34019.3	2611	2e-24	31 - 90	100	60 / 60	minus	ABC09454 ABC46784
MLOC	AK362735	2736	7e-23	2675 - 2734	98	59 / 60	plus	ABC09454 ABC46784
MLOC	AK358457	3031	3e-22	2973 - 3031	98	58 / 59	plus	ABC09454 ABC46784
JLOC1	JLOC1_21965.4	2614	8e-25	2498 - 2557	100	60 / 60	plus
JLOC1	JLOC1_21965.3	2602	8e-25	2486 - 2545	100	60 / 60	plus
JLOC1	JLOC1_21965.2	2568	8e-25	2452 - 2511	100	60 / 60	plus
Harvest21	ABC09454	1117	3e-25	1042 - 1101	100	60 / 60	plus	ABC09454
Harvest35	U35_4246	1117	3e-25	1042 - 1101	100	60 / 60	plus

Contig Sequence (1117 bp)

>U35_4246 1117 Hv_44K_v2
GGTTCCCACAGATCAGAGGCAATCAACTGTCGGAGGTAATGAAATCAGCCAGTAGTGAGG
CAGTCGACCTTATATCCTCTTTGTGCTCGTGGGATCCTTGCAAGAGACCGAAAGCTGCGG
AAGTTCTCCAGCATGCCTTCTTCAAGGATTGTACATATGTTCCAGCTTCTGTCCGGCCAA
AAGTTGCAGGTCCCCCTAAAACTCCTCCGGGTGTTGGAGTAAGAGGAGTTTCAGGGCACA
TTGCTCGGAGATACTCCACTGGAGCTCTCTCCACAAGCAAACCTGCTGGCAACATTTCTA
TAAAACCGAACAGCTTATCTAAGATCGGTGTGCAAAGAAAACTTCAATTGGATCGCCAGG
CACCAGAGAAAAAAAGTACACGGCCCGCTGAGAGTAACACCAAACAAACTACTAGTCGAG
TACCGGCAAGGAATAGCCCAGTGAACGCAAACCCGATGTTAAGGCATTCACGCAGCTTAC
CTGAAACTGGTCGGGCAACGGTTCATAAGGTTTCGAGTATCACCGAAAGGCTTGCTCATA
TGTCTGTGACCTCTCGAACACGCACGACTGTGAAGCCCCCTGTCCCGCTGTTGAAGGCTG
GGCATCTCAAGTCAGACTTCCTTGGGAAATCCGATGAAATCCCTCCGGCAAAGAGATTGA
CAAGAAAGTTGGTGAGCTAAAGGAGTAGAGTGAAGAACCGATCGGCTGCAGAGAGGCATG
TAGGCTACGGAGCTAAAACCAGGTTTGCCTCAGAGCCGACCGAGTGTTTTGCCTGTTCAT
GGTCCTTCTGGTTGTTTCCTCCCCCTGCTTGCTTTGTTCATGTGCCACGGTAGAGAATGT
GTTGCGAATGGGCTCGAGCCTGCTGATCTTTCGCTGTACTGGGGTGTGAATTTGCCCATG
CCCTGAGTTTGTCCTGTCTATGAACAAAACATGTGTGGTCTTTGTTTGTCCTGAGTTTGT
GAACTAGTTTTATCATTCGTCCATATCGCGGACCATTGTCCTGTTCATGTGCAATCTAAC
AGTCGACAAACCCTCCAATGAAGAGGATAACTTGGTTTCGCTTGTACAGTTTGCTGAGAT
TTTATAGAGCATGTTAGTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4246 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g47220.3	426	2e-106	protein\|CPuORF20 - conserved peptide uORF-containing transcript, expressed
Brachypodium v1_2	Bradi3g52530.3	370	1e-118
Arabidopsis v10	None