barSeed - Barley Seed Development Database

Probe CUST_30951_PI390587928

Source Contig U35_4254

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30951_PI390587928	Hv_44K_v2	GATGCTGTCGTAACTATCATGGATGGGATATATTGGCTATATCTTACATTTTTTGACAGA	1077	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.608	1.654	1.176	0.943	0.455	0.523
Raw	869.382	1416.161	875.777	1089.432	186.799	232.826

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64590.1	1872	2e-24	25 - 84	100	60 / 60	minus	ABC09838
MLOC	AK362143	1138	7e-23	1082 - 1138	100	57 / 57	plus	ABC09838
JLOC1	JLOC1_42428.1	1087	8e-25	1004 - 1063	100	60 / 60	plus
Harvest35	U35_4254	1174	3e-25	1078 - 1137	100	60 / 60	plus

Contig Sequence (1174 bp)

>U35_4254 1174 Hv_44K_v2
GAGGAATCTCATATTGCCAAGCCCGGCGGCCCGCACCCTGCCAAGACTCGAGAGTCAAGA
CACCGCCGCCGCCCCTCCTCGCCGGCGCTCCACCGGCTCGCCGCCATGGCCCCAGCCAAG
TGGCTGATGCACTGGCACCCGAACCCTGGAGTGACGCTCAATACCCAGATCCTGTCGGAG
GCCTGCGGCTGCGCGGAATCCCTCGGCGGCACCAAGGACGGCCGCTGGAAGACCTCCATC
ATCTTCTACCGCCCGATGACGCGAGACGGCGCGGGCGGGGCGCAGCAGAACCAGCTCGCC
GATGTGCCCCGCGAGCTCCTCGGAGTCGCGCTCCACGAGCGCCCCGGGCTCTACTTCTCC
ATCCTCCGGAACCAGCGCCTCGTCCTGCAGGCGGACGCTGCCTTCTCCCAGGTCATGGAG
AAGCTCCAGTCCTTCAAGGCCCGCGTCAACCTCAACTTCGAGGGATTCCAGTATCAACTC
GGTGATTTTTGCTTGAGGATAGGAAAATGTGTTCCTAACAATACTGAAACACTGAGAGGA
ATCATGATGGAGGTAGAGTATTACCCCCTATCTTCCATCGAAAAGTCCAGGGCCATTATG
GTAGACTTCTTTGACATATGGCAGGAAACGCTCGCAAAGAAGTCGCTGCCTGGTCGATTC
ATCCATGTGGAATCTAATTTCTCAGAGTATGGTCTTTCGGATCACTACTCTTTCCAGCAC
ACCGCAGTTCAGTACGCTACGTGCTTGCAGCAACTCATGGCAGCTGTGAGGGCCTAAGAT
CCGCGGATGGAACTTTGAGAATATCATGATGTTTAACTTGTTCCCAAGATCCTGATAACA
TCGACATAGGGCAGGACATGCATCTTATCTGCTGAAATGTAATCAGTTTGTATGTTGTTC
GCGGCTAAGTATCCCTTCCTCTACCATGTTTCAGATGTTAACCTGATTTATTTGCAAGGA
AAATCAAGTTGTAATGGTCATCTGAGCAACCGAGTAGCTGTTGTTTGTGTTCTCATTAGC
TCCCAGTAGATAATGCTGGGTAATGTCGCTGTACAATTTTTTTGAACATGAACATCTGAT
GCTGTCGTAACTATCATGGATGGGATATATTGGCTATATCTTACATTTTTTGACAGAGTT
TTGCTCTTTTTGTTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4254 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g27140.1	231	7e-137	protein\|expressed protein
Brachypodium v1_2	Bradi4g31500.1	226	2e-143
Arabidopsis v10	AT2G28230.1	219	1e-82	TATA-binding related factor (TRF) of subunit 20 of Mediator complex \| chr2:12037855-12039009 REVERSE LENGTH=219