barSeed - Barley Seed Development Database

Probe CUST_30949_PI390587928

Source Contig U35_4256

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30949_PI390587928	Hv_44K_v2	CCAATATATGATGATCGTACATGTGGTGCTGCAAATATATGGTATTAGACTTAGGGTTTT	1767	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10219.1	3721	2e-24	59 - 118	100	60 / 60	minus	ABC11306
MLOC	MLOC_10219.2	3737	2e-24	59 - 118	100	60 / 60	minus	ABC11306
MLOC	MLOC_10219.3	3726	2e-24	59 - 118	100	60 / 60	minus	ABC11306
JLOC1	JLOC1_6670.3	3855	8e-25	3725 - 3784	100	60 / 60	plus
JLOC1	JLOC1_6670.2	3844	8e-25	3714 - 3773	100	60 / 60	plus
JLOC1	JLOC1_6670.1	3839	8e-25	3709 - 3768	100	60 / 60	plus
Harvest21	ABC11306	1856	3e-25	1768 - 1827	100	60 / 60	plus	ABC11306
Harvest35	U35_4256	1856	3e-25	1768 - 1827	100	60 / 60	plus

Contig Sequence (1856 bp)

>U35_4256 1856 Hv_44K_v2
TGTTGAGCGCGGGTCGTGGATCTTCTTCCAAGGGTACAAGTTCTGTGAGCTGGAAACATG
CAGTGGATGCAGAGAAGTCTACCCACCTGACACCCAATAAGGTTGATGATTTGAATATGG
AGCCCCCACAGCCCTTTGCACAACCTTACAGCTCCAGGAGTTCCACAAATATGGGGCAAA
CATCACCTAGTGCTTTGCATTCACCAGCTTCAGGAGGCGTGTCTGCCTTTGGCCAATGGA
GGCAAAAGCCCTCACAGCTTGCAGCACAAGGTTCTGATTTGAGCGACTACAAGCTACTCG
TGGAACGCCTGTTCAAGGTAGTTGGAAGGCAGGAGGAAGCCCTGAGTGCTATCTGTGGAT
CCATTGTTGGCTGCCAGTCAACAGAGAGGCGCCGCGGCGCAAGCAGGAAGAACGACATCT
GGTTCAGCTTTCATGGTTTCGACAGCGTGGCCAAGCGGAGAGTTGCCGTGGCGCTGGCAG
AGCTCGTGCACGGCAGCCAAGACAGCTTCATTCATCTGGACCTGAGCCTCCAGGACTGGG
GCGGCTCAAGTTTCAGAGGAAAGACTGGCATAGATTGCATCGTCGAGGAGTTGAGCAAGA
AACGGCGCTGTGTCATCTTCCTCGACAACATTGATAAAGCTGACTGCCTCGTTCAGGACA
GCCTCTCCCATGCCGTTGACACCGGAAGATTCCGGGACATGCGCGGCAAGGAAGTTGCCA
TTAATGACTCCATAGTAATACTGTCAACAAGATTGGCGCGATGCAGCAAAAATGCCTCGG
TTGGGGTGGAAGAGGGGCATATCTTCTCCGAAGAGAAGATCCTGGCTGCTAGAGGACAAC
AACTCAAGATCTTGATAGAATCAGGCACGGTGATCACCAGCAGAGGCTCTCCTAGTAGCA
GCAAGGTGGCAGCTTCCCCAAGTCACCCTCTCACCAAAATTCAAACTTCCGTGTACTCTG
GTTGCGTCAGTAAGCGGAAGCTTGACATTTCTGACGACCGTGAAAAGCTGCTAGAATCAC
CGAGCAATCCCAAGCGGCCGCACAGAACCTCAAGTGTGCCGTTCGACCTGAACCTCCCCG
TCGGCGAGGACGGATCCAGTGACGCTGACGGCGACGACAGCAGCAGCAACGACAGTCCAG
ATGAGTCCATCGACAGCCTCCTGGGTTTGGTCGACAGAGCGATCGAATTCAAGGCGTTCG
ACTTTGGGAAACTCGCCAACGACATCCTGCAGGAGCTGAGCAACGTGCTCGGCAACATCA
TGGGCCCGGGCAGCACGCTGGAGGTCGGCGATGGCGCGATGGAGCAAATGCTTGCGGCGT
CATGGGCATCGGAGGACAGGCGGCGCCCTCTGCAGGCCTGGCTGGAGCAGGTGTTCGCCA
GGAGCCTCGAGGAGCTGAAGCTCAAGCACAGTAAGCCTGCGGGCAACTCTGCTCTTAGGC
TAGTGGCCTGTGACTGTGAGGACGGCAAAGCAGCAGCGACGGCGGCGAAGGAAGACGGCG
GTTTTGGACCGCTGCTCCCCTCGAGAATAATTCTGGAGTGGCGATGAATGGATGACAATA
TCTGTATATACTGTGATGGATCGCGTCATTGTTGGTAGCTAGTCCACGGTAGTATAGCGT
TATAAGCCTGGTTGCGAACTAAATAAGTTGTAGTCTACACTAGTTGATTGCTGGTAGGCT
ACACTAGTTGATGATGCACTGCCTTCTTCGATCAATATATATTGGCAAGTGTATAGATTT
TGACTGTAACTATTGTTGATTTCTTTGCCAATATATGATGATCGTACATGTGGTGCTGCA
AATATATGGTATTAGACTTAGGGTTTTGGGAAAAAAAAAAAAAAAAAAGAAAAAAA

Homology of Contig U35_4256 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g01330.1	1132	6e-175	protein\|expressed protein
Brachypodium v1_2	Bradi4g26750.1	1123	0.0
Arabidopsis v10	None