barSeed - Barley Seed Development Database

Probe CUST_30948_PI390587928

Source Contig U35_4257

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30948_PI390587928	Hv_44K_v2	TGTGTGTGCTGATTCGAAGACTTGTGAAAACCATACTTTTGTAGTGTTACAAGTTTAGGT	1168	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63838.1	2056	3e-21	416 - 475	97	58 / 60	minus	ABC11667 ABC11741
JLOC1	JLOC1_41857.1	2064	2e-21	1588 - 1647	97	58 / 60	plus
Harvest35	U35_4257	1282	3e-25	1169 - 1228	100	60 / 60	plus

Contig Sequence (1282 bp)

>U35_4257 1282 Hv_44K_v2
GGCTGCAGGCGGTGAGCTACTAGCTCGGGCTCCCCGTGCGCCCACCGCGCGCGCTCCACT
CACTTCCTCTTCTTCACCCCACCACCACCACCACCACCACTCGGTTTGGGTCGCATTCAT
ATCGCTTACTCCGCACTCCACTCGAGAATGCAGCAGCAGCAGCAGACGGCGCGGCGGCGG
CGGAGCCCGGGCGGCGGGGAGTGGGAGGGGGCGGGCACGGTGGACGAGGCCTCCATGGAG
CGCAGCAAGAGCTTCGTCAAGGCCCTGCAGGAGCTCAAGAACCTGCGCCCGCAGCTCTAC
TCCGCCTCCGAGTACTGCGAGAAGTCCTACCTCAACACCCACCAGAAGCAGATGGTGCTG
GACAACCTGAAAGACTACGCGGTGCGGGCGGTTGTCAACGCCGTCGACCACCTAGGCACG
GTGGCCTACAAGCTGACGGACCTGTTCGAGCAGCAGGCGTCCGAGATCTCGACATTCGAG
CTCAAGCTTGCGCGCTTGAACCAGCAAGTCTTCACCTGCCAAGTCTATGTGGACAAAGAA
GGGTCTAGGCAGCAGCAAATGATGGGGGCGAGCATGAAACACCACAAGCACTACATCCTA
CCCTCTACGGGTTATAAGAGAACTCAGGCTGTCGTGCACCTGGGAACAGACACTAATCAG
GAATCACAGCCTAGACCTTACCCCTCAGCAAAGACACTTTCCTGGCATCTGGCATCAGAC
AATAGCCCTTCAGCAGATGGAGCAAACAAACCTACATTCATCCTAGACGACACGATATCG
TCCAAACCCGCATCGGATGGTTTGCATCTTCTTGGTAAGGAGTTGCCTGGTTCTCCCATG
CGCAGGCCTCTGCAACTGAACAGGAATACCAAACCTGACGTTATACAAAAGGCTGGCACA
AAGGATCAGACAGGTGTCAAGCATATGTCGACGTTTAGTTCTTTCGACAGGCCTACAGGG
CGTGAAATCCAGAAGGCTCCTGCCAACACTAAGAGCGTGCTAGCATCTCTGTTTATGAAA
CACAAGTCGGCAAAGATGAAAAGTATCTCAGCCCGATGATCCTCTGTTGATGTAAATGAA
GTTTGTTGTAATAATCAGTACAAGCTAAGTAAAATGCAGTTGTATCTCTTTAAGATGACA
GGTCATAATATCTCTTATCTGTATAATATGTGTGTGCTGATTCGAAGACTTGTGAAAACC
ATACTTTTGTAGTGTTACAAGTTTAGGTATATTCACATGAAATCGTGATATTCCTTGATA
TGGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4257 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g50800.2	303	1e-141	protein\|expressed protein
Brachypodium v1_2	Bradi2g15510.1	309	2e-169
Arabidopsis v10	AT2G46225.2	329	9e-72	\| Symbols: ABIL1 \| ABI-1-like 1 \| chr2:18982113-18984074 FORWARD LENGTH=329