barSeed - Barley Seed Development Database

Probe CUST_30917_PI390587928

Source Contig U35_2521

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30917_PI390587928	Hv_44K_v2	TTTTAACGGTTTTTGCGCAATCTTCTTTCACGGTTGCAAATATATTCGAAGGAATGTTCT	819	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363091	1778	2e-24	727 - 786	100	60 / 60	plus	ABC06306 ABC06308
MLOC	AK366801	1771	2e-24	826 - 885	100	60 / 60	plus	ABC06306 ABC06308
MLOC	MLOC_14454.1	1286	2e-24	603 - 662	100	60 / 60	plus	ABC06306 ABC06308
MLOC	MLOC_14454.2	1802	2e-24	1149 - 1208	100	60 / 60	plus	ABC06306 ABC06308
MLOC	MLOC_14454.3	1912	2e-24	1259 - 1318	100	60 / 60	plus	ABC06306 ABC06308
MLOC	MLOC_14454.4	1788	2e-24	1135 - 1194	100	60 / 60	plus	ABC06306 ABC06308
JLOC1	JLOC1_9879.2	1201	8e-25	664 - 723	100	60 / 60	plus
JLOC1	JLOC1_9879.1	1420	8e-25	883 - 942	100	60 / 60	plus
Harvest21	ABC06307	922	3e-25	820 - 879	100	60 / 60	plus
Harvest35	U35_2521	922	3e-25	820 - 879	100	60 / 60	plus

Contig Sequence (922 bp)

>U35_2521 922 Hv_44K_v2
CATCACATCGCCACCTTATTCTTCTTCGGAGTCGAGAGCTTCGTGCCCTCCAATCGGCGG
TCGGCGCACGCTCTATCTGTTTCGCGGATCATCTATTTGTGAAGCAGTCATTGGTTGACC
CAACTTGGTGATTCACAGCGGCGTGCTCCTCTGTGTTTCGCCGCTCGCTGTAAGAATTTT
GCTTCTGCCGGCGGATCCGATCTAACGCCACTTTTGCTGTTGTGGCGTATTTTGCAGACC
CGGCTGCAGCGATGGAGAAGGAGGCGAGCAGCTCCAGCGACGTGTCTGCTTCTCATGTAG
GCCGTGTTAGGAATCGTAAGCGCCCTAATGAGGTCATGACAGACGGGAATAAAGCCAATG
GACAGACTTTGCTTGTCAGCGACCGGAACAAGTATAAGTCGATGCTTATCCGTACATATT
CTACTGTTTGGATGATTGGTGGCTTTGCATTCCTAGTTTATATGGGTCATCTTTATATCT
GGGCCATGGTGGTTGTCATTCAAATATTCATGGCGACAGAGCTTTTTAACCTACTCAGAA
AATCCAGTGAAGAAAAACAACTGCCAGGGTTCAGGCTTCTGAACTGGCACTTCTTTTTCA
CAGCAATGTTGTTTACATATGGACGCTTTCTTAGTCGGGAGCTTGTTAACACAGTATCTT
CAGATCACTTGTTGTATAAGCTCGTCAGCGGCCTAATAAAGTATCAGATGTTTATTTGCT
ATTTTCTTTATATTTCAGGATTTGTATGGTTTATTTTGACACTGAAGAAGAAGACATACA
AATACCAGTTCAAACAGTATGCCTGGACACACATGATCCTTTTAACGGTTTTTGCGCAAT
CTTCTTTCACGGTTGCAAATATATTCGAAGGAATGTTCTGGTTTCTTCTACCTGCTTCAC
TTATTGTGATCAATGACATTGC

Homology of Contig U35_2521 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g55360.4	325	9e-121	protein\|phosphatidate cytidylyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g05050.2	394	5e-127
Arabidopsis v10	AT1G62430.1	421	1e-95	\| Symbols: ATCDS1, CDS1 \| CDP-diacylglycerol synthase 1 \| chr1:23106274-23108923 REVERSE LENGTH=421