barSeed - Barley Seed Development Database

Probe CUST_30870_PI390587928

Source Contig U35_16811

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30870_PI390587928	Hv_44K_v2	CAAGTATTGCAACAGTCATTGTTTTTAATGTGATGATTCTAGTTATGCTGTTTGGTTGCC	4092	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68482.3	4604	2e-24	4480 - 4539	100	60 / 60	plus	ABC02541 ABC37816
MLOC	MLOC_68482.5	4692	2e-24	4574 - 4633	100	60 / 60	plus	ABC02541 ABC37816
MLOC	MLOC_68482.4	4603	2e-24	4479 - 4538	100	60 / 60	plus	ABC02541 ABC37816
JLOC1	JLOC1_45311.1	4645	8e-25	4479 - 4538	100	60 / 60	plus
Harvest21	ABC02541	2653	3e-25	2037 - 2096	100	60 / 60	plus	ABC02541
Harvest35	U35_16811	4182	3e-25	4093 - 4152	100	60 / 60	plus

Contig Sequence (4182 bp)

>U35_16811 4182 Hv_44K_v2
CAAGATGTTTACCATGAGGTTGCGGTGCTGTTCAGCGACCATAAAGACCTGCTCGAAGAA
TTCCAGCACTTCTTGCCTGACACCTCGGTGTCTCCGCAAGCAGGGACCGCGCCAAGAGGC
GGCTTAGTTAAGCGGGAAGCTCTAATGCCCCCTGCCAGTAGGGGTCACATTGAAAAGCCT
AGGGCTTTTCCATCTCATACCGACCGTGATGCCAGTGTCGATCGTCCTGATGTGGACCAT
GATCGCCAAAGACAACGGGAGAAGAACAAGGAGCGCAAGGCAGAAAGGGAGAGAAGGGAT
TATGATAGAGATGAGAAAGATGGTGAACAAGACAGCAAAGAGCTGGATGTTGGCCAGCAT
AAGCGCAAGCCTTTTCCAAGCGCAAACCTTGCAGCAGGTGCTGAGGCACACCAAGGAGGC
CACCCTGAGATTCATGGAATAGCTAGTGCCTCTGCTTCATCACATGATAATAAGGACGCG
TTAAAGAGTGCATACACACAGGAGTTCCATTTCTGTGAAAAAGTTAAGGAGAAGCTGGAA
TATGATGCTTACCAGGAGTTCTTGAAATGCCTTCACATCTACAGCCAGGAAATTATTACG
AGAAGTGAACTGAAGAACCTGGTTAGCGATATACTACAGCACTACCCTGATCTTATGGTT
GGATTTAATGAATTCTTAGAACATTGTGAAAATATAGATGGATTTCTGGCTGGAGTCTTT
AGTAAAAAGCAACCTGGAAGGCTAATCAAAACAGAGGATAAAGAAAGAGATAAGGACCAT
GAGAGGGAGGAAAGGAACAGAGATCGGGACAAGGAAAGAGAAAAGGAACGGGAAAGACTA
CATCCAAAGGAAGGCCCTAGCCAGAAACCCTCGGTTGTCAAAGAGAAGTATCTATGCAAA
CCAATATCAGAGCTGGATCTCTCAAATTGTCAGCGATGCACTCCAAGTTACCGGCTTCTA
CCTAAAAATTACCCAATGCCTCCGGCAGGCAACAAGACTGATCTTGGTGCCTCAGTTCTT
AATGATCACTGGGTGTCAGTGACATCAGGGAGTGAGGACTATTCCTTTAAGCATATGCGC
AAGAATCAGTATGAAGAAAGTTTATTTAGATGTGAAGATGACAGGTTCGAGTTGGATATG
TTGTTGGAATCAGTTAATGCGGCAACTAAGCGGGTCGAGGAGTTGATAGAAAAAATGCAA
GATAACTCGGTGAAACCAGAAAGCCCAATACGCATCGATGAACACTTAACTCCTCTGAAT
CTAAGGTGCATTGAACGGTTATATGGTGACCATGGTCTGGATGTGATGGACGTTCTTCGA
AGAAATGCTAGTGTTGCACTTCCAGTTATCTTATCCAGGCTGAAACAAAAGCAGGATGAA
TGGTCAAGGTGTCGGTCTGATTTCAACAAGGTTTGGGCTGATATTTATGCCAAAAATTAT
CACAAGTCACTTGATCATCGCAGTTTCTATTTCAAGCAGCAAGACTCGAAGAACCTTAGC
ATAAAATCTCTATTGACTGAGGTTAAAGAAATTAATGAGAAGAAAAGAAAGGAAGACGAT
GTTCTCATTGCTATTGCTGCTGGAAATAGGCGTCCTATAGTTCCCAATATGTCATTTGAG
TATGTAGATGCAAATATCCATGACGATCTTTATAAGATCGTCAAGTACTCATGTGGAGAA
GTCTGTGGCTCGGACCAACTGGACAAAGTGATGAGGATTTGGACAACTTTTCTGGAACCA
ATTTTACGCGTCCCGCCTCGGTCCCATGGTACCGTGGATGCAGATATAATTAAACCCAAG
AATGGGATCACAAAATCTGGTATTGCAAATGTGGGAAAAGCAACACTTCTCCTGATGTAG
TTGCTGCCCAGCAAGGCCATGGTGATGAAAGCATGCAACATGAACAAGCACCATCAGCTG
TGGCTAGATTGGCTAGGTCAGTGAAAGGAGTTGCAGCAGACTCCCAAAATGGTTCCCGTG
ATGCAGATCGAACTGCTCGTAGAGATGACGAAGCATCAAATGCTGCACTAAATGAAGTAT
CTGCAGTAAGCACCCAGAACATGCCTACTGAGAGGTCAGCAGGACAACATAGCCATATGA
AGGGAAACTCTGAAACCCACCAGGAGTGAATGCATCTAAAAGTTCACATGCTGGGGTTAG
TATAGCTGGTGGTGCCAGGGCTGGCCATGAAGCATTACCATCTACTGAGGGTGGAGAGAT
TGGCAAGTCAGGATCATCTTTGAATGGTGGGGCTACCGGTGAGGGTAACAAAGGGCGCCT
ATTTAATGAACCTGCTGCGTCCCATAATACTTCGAAAGTTGAAAGAGAAGAAGGTGAACT
ATCGCCGAATGGAGATTTTGAAGAGGACAACTTTGTGCCTTTTGAAGATGGCGCGTCTAA
AACAAAGGAAGGTTCTACGAGCAGAGCATTCAAGGTTAGACCTGGTCAAGTGGAACCTCA
TGCTGAGGCAGCTGGCGAGAATGACGCTGATGATGAGGAAAGCACTCAAAGGTCTACCGA
GGACAGTGAAAATGCTTCTGAGGCTGGTGAAGATGCATCGGGAAGTGAATCTGGTGATGG
CGAGCAGTGTTCTCGTGAAGATCATGACGAGGAAGAAGATATGGATCATGATCAGGATGC
GAAGGCAGAAAGTGAGGGTGAGGCAGAGGGGACAACTGAGAACCATGACGTTGAAGGAGG
AATATCGTTACCCGGAATATCATTACCTTCATCAGAACGCTTTCTGTACTCGGCTAAACC
GCTGGCCAAGCATGTACCCTCATCTTTACATGGTCGGGAGAACAGATCATCACATATATT
TTATGGGAACGATTCATTTTATATCTTGTTCAGGTTGCATCAGATGCTGTATGAAAGACT
GCTTTCAGCAAAGACAAACTCTTCAAGTGCTGAAAAGAAATGGAGAATCTCCAAGGATAC
AAACCCACCTGACCTATATGCAAGGTTCATAAAGGCACTGTACAACTTGCTCGATGGTAC
TTCTGATAATACCAAGTTTGAGGATGACTGCCGTGCTATTATTGGGACCCAGTCATACGT
TCTCTTTACTTTGGATAAACTGATATACAAAGTTGTGAAGCAGCTTCAAGCCATAGCAAC
AGATGAAATGGACAGCAAGCTTCTCCAGCTTTACATATACGAGAAGTCAAGATCCCCTGG
GAGGTTCTTTGATCTGGTCTATCATGAAAACGCCCGTGTCCTACTCCATGACGAGAGCAT
GTATCGTTTCGAATGTTGCTCAAGTCCAACGAGGTTGTCTATTCAGCTGATGGAATATGG
TCATGAAAAGCCTGAAGTGACTGCGGTATCCATTGAGCCAAATTTTGCCTCGTATCTTTT
CAGCGAGTATCTGTCAAATTCATCAGGCACGATGTTGCCTGAAGGTGTCTTCCTTGGAAG
GAACAAGCGGAAACATTCAAATGATGGTGAGCCTTCAGATTCATTAAAGGCCATGGATGG
TATCAAAGTTGCTAATGGTCTTGAATGCAAGATATCCTGCAAGACCTCCAAGGTCTCCTA
TGTCCTTGACACCGAAGATTTCTTGTTTCGGTTGAGAAAGAGGAGGAGGCTTTCACCTGG
TGGAAACGTGGCTGACAAGTCACCGACTTCCAAAAAGTATGCTGCAAAAGTGCAGCGCTT
CCATTTGTTTCTATCCAAGCCTTAAGAGGGCCATAGGCAAAAAAAAACATTGGCGCCTTG
CAGACATTGTATCCAAATCAGGAGATGCCGCTGGGGTTGCGACCGCCTTGCTCTTGCTTC
GACAGTGACAAGAATAATAATAATCAGCTGGCCGCTGGATAGATGATATACTTGGTAAAT
ACAGCAAAGCAAAGCATGTTAGAGCCACCTCAGTCAGCCTTAGGCCGCGCCGAAAAAAGA
TGTGTGTGTGCGTGTCTATTTGTAAATATGTACTGTCAGAAGAATGTTGTTTGTTCTGTT
AACATGTTACCTGTAGTGTCTTTTTGGTCGTAGAAGGATGATCACCATTTGTTGATGTTG
GTATAGGTCTCTTGTTATGTCATATTGACTCAGTTTTTGGGTTCAAGATATGTAGCCTTG
GTCGGTTAAATGCAAGTATTGCAACAGTCATTGTTTTTAATGTGATGATTCTAGTTATGC
TGTTTGGTTGCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16811 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g01960.1	1326	0.0	protein\|transcriptional repressor, putative, expressed
Brachypodium v1_2	Bradi2g00860.1	1338	0.0
Arabidopsis v10	AT1G24190.1	1330	5e-177	\| Symbols: SIN3, ATSIN3, SNL3 \| SIN3-like 3 \| chr1:8563858-8569927 REVERSE LENGTH=1330