barSeed - Barley Seed Development Database

Probe CUST_30868_PI390587928

Source Contig U35_16813

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30868_PI390587928	Hv_44K_v2	CAAATTCGATTAGACTGTAGACTGATTTGTGTAGGATCATATCAATGTGCATGTCCATTC	1897	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.252	3.995	1.341	0.598	0.174	0.234
Raw	372.002	285.768	82.523	58.236	5.031	8.196

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65439.2	2229	2e-24	1926 - 1985	100	60 / 60	plus	ABC08854 ABC08855 ABC28887
JLOC1	JLOC1_43063.1	2324	8e-25	2021 - 2080	100	60 / 60	plus
Harvest35	U35_16813	1957	3e-25	1898 - 1957	100	60 / 60	plus

Contig Sequence (1957 bp)

>U35_16813 1957 Hv_44K_v2
GACGCAGCAGCAGCAGCAGCTAGCGCGCTAGAAACCAAAAACAAAGAGCAGCAATGGCCA
CGCCCTCCGCCGTCGGCTGCTTCCTCGGCCTCGCCTTCCTCCTGCTCTGCGGCGCCGTCC
GTGGCGGCGGCGGCGCGCCCGACGCGGAGGCCGCGCGGCAGCAGGCGGCGGACCGCGTGG
GGCGGCTGCCGGGGCAGCCGGCCGTGAAGTTCGCGCAGTACGCCGGGTACGTGACCGTGG
ACGAGGCGCACGGCCGCGCGCTCTTCTACTGGTTCTTCGAGGCCACCGCCGGCGCCGCCA
AGAAGCCGCTCGTGCTCTGGCTCAACGGAGGGCCGGGCTGTTCGTCCATCGGGTATGGAG
AGGCAGAGGAGCTAGGGCCCTTCTTGGTCCAGAAGGGCAAGCCGGAGCTGAAATGGAACC
CCTACTCGTGGAACAAAGAGGCCAATCTGATGTTCTTGGAGTCCCCGGTGGGCGTCGGCT
TCTCCTACACCAACACAAGCTCCGACCTGGGCAAGCTTGGTGACAAGATCACCGGTAGAT
AATAACAATCCTCTGAGAATCCCCTCCAGAGCAGCAAACAACGATCCTGAATTTCTGACT
GGATTATGTATATCATGCCCGCACAGCCGCCGACGCCTACGTCTTCCTGCTCAACTGGTT
CAAGCGGTTCCCGCAGTACAAGCACCACGAGTTCTACATCGCAGGCGAGAGCTACGCCGG
GCATTACGTTCCGCAGCTATCGGAGAAGATCTTCGACGGCAACAAGCACGGGCCCAAGGA
GAACCGCATCAACTTCAAGGGTCTCATGGTAGGGAATGCTCTGATGGACGACGAGACGGA
CCAGGCGGGCATGGTCCAGTACGCGTGGGACCACGCCGTGATCTCCGACCGGGTGTACTC
GGACGTCAAGGCCCACTGCGACTTCGCCATGGACAACACCACCGCCGCGTGCGAGCAGGC
GCTGGAGGACTACTTCGCCGTCTACCGCCTCATCGACATGTACAGCCTCTACACGCCCGT
CTGCACCGACAGCTCCTCCTCCTCGCCGCTCGCCAAGAGGGTCGGCGTCCACGGCGCCGC
CCCCAAGATCTTCTCCAAATACCATGGGTGGTACATGAGGCCTGCAGGTTACGATCCCTG
CACGACTCAATACTCCGAGGTCTACTTCAACCGGCCGGACGTCCAGGCGGCGCTGCACGC
CAACGTGACCAAGATGGGCTACAACTGGACGCATTGCAGCGACGTGATCGGCAAGTGGAA
CGACGCCGTCCCCTCCACTCTCCCCATCATCCGCAAGCTCGTCGCCGGCGGCATCAGGGT
CTGGGTTTTCAGCGGTGACACTGATGGGAGGATCCCCGTGACGGCGACGAGGCTGACTCT
GAACAAGCTCGGACTCAAGACCGTCCAGGAGTGGACGCCGTGGTACGACCGGCTGCAGGT
GGGTGGGTGGACGATCACCTACGAGGGCCTCACGTTCGTGACCATCCGCGGAGCCGGGCA
CGAGGTCCCTATGCACGCGCCGAGGCAGGCGCTCAGCCTCTTCACCCACTTTTTGGGTGA
TAAGAAGATGCCTCCCACGGCCTTCTCCTAGAGACGGAACACATCACCTCACCAGGGGCT
TCCTTTTCTTTGTTCTCGGCCAATGCTATACTAGATGTAATTCGATTGGAACAATCGTTA
ATAAACAAGAAGTCATAGTGCTGATTGGTTTCAAAAAAAAAAAAAAAAAGGCCCGTATTG
GATCGCAACACACTTAAATAAACAAGTCACAGGGAGCGTTTCGTTGCCGGCGAGGAACAC
CTCCGATGGCAATGCCAGGGAATTGAATACACGGTTAAGGTATTTTTGGGTCATATATTA
GATTAATTCACTGATTGTTCATGTCAATGGCGATGTGCAAATTCGATTAGACTGTAGACT
GATTTGTGTAGGATCATATCAATGTGCATGTCCATTC

Homology of Contig U35_16813 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g42310.1	486	0.0	protein\|OsSCP8 - Putative Serine Carboxypeptidase homologue, expressed
Brachypodium v1_2	Bradi3g49590.1	483	0.0
Arabidopsis v10	AT5G23210.1	499	1e-171	\| Symbols: SCPL34 \| serine carboxypeptidase-like 34 \| chr5:7810892-7814837 FORWARD LENGTH=499