barSeed - Barley Seed Development Database

Probe CUST_30858_PI390587928

Source Contig U35_16819

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30858_PI390587928	Hv_44K_v2	GTGTCGTGCCACACATGTGCCAGATTATCACCATTAATAGAATTCTTTCATTTGTTTGTT	602	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366887	674	2e-24	615 - 674	100	60 / 60	plus	ABC06015 ABC07498 ABC11825
MLOC	MLOC_23128.1	360	2e-24	279 - 338	100	60 / 60	plus	ABC07498
JLOC1	JLOC1_15990.1	443	8e-25	280 - 339	100	60 / 60	plus
Harvest21	ABC07498	679	3e-25	603 - 662	100	60 / 60	plus	ABC07498
Harvest35	U35_16819	699	3e-25	603 - 662	100	60 / 60	plus

Contig Sequence (699 bp)

>U35_16819 699 Hv_44K_v2
GCCTCTCCACTCTCCACAGAGCCCAAGCATCTGCATCCCATCGTCTCCTCTCCTCCCTCA
ATCTCAGGGAAGCTCTCCGCAACCAACAACAGCCAGATGGCTCGCTTCGCCGTGGTCGCC
GCCATCATCGCGCTCCTGGCCGTCGCCGCCGCCGCACAGGGCCCCATGCCGGCGCCCAGG
ATGGCCCCGCTCCCCGCCCCGCCGGCGAGGTCCCCGGTCGCCACCCCGCCCGCCGCAGCG
TCGCCGTCCCCGATGGCCTCTCCCCCGGCCCCGCCCACCGACGCCCCGACCGACGCTCCC
AACGCGATGACGCCCTCCGCGGTCTCCGCCACACCCTCCGGCGCCCCCACCGGCGCCCCC
GCGAGCTCCGCCGTGCACTCCTCCGCCGCCAGCTTCGTCGCCGTCGCCGGCGCTGTCGCC
GCGGCCGCCATCATGTTGTAGATGCAGGCAGGATCGTTCATCTGATCTTCGACCTGCCGC
CGCGCGCCGTGGGGCTCTGAGCTCTGAGTCTGTTGCACCGTTGTTCTTGTTCGTACTACG
GGATTCTTTCTCGGTTCTCTTTGTTGAGCTCGGGAGGGGAGTGAGTTACATGTAGCGCCG
CGGTGTCGTGCCACACATGTGCCAGATTATCACCATTAATAGAATTCTTTCATTTGTTTG
TTAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_16819 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None