barSeed - Barley Seed Development Database

Probe CUST_30810_PI390587928

Source Contig U35_9065

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30810_PI390587928	Hv_44K_v2	GTATGTGTCACAAAGGTAATCATCTATGCGGGAATAATGAGGCATCAATTGAACAAAAAA	895	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15701.1	2478	3e-22	1946 - 2001	100	56 / 56	plus	ABC17102 ABC26328 ABC47779
JLOC1	JLOC1_10787.1	2319	1e-22	1764 - 1819	100	56 / 56	plus
Harvest21	ABC47779	324	5e-23	72 - 127	100	56 / 56	minus	ABC47779
Harvest35	U35_9065	978	3e-25	896 - 955	100	60 / 60	plus
Harvest35	U35_47012	324	5e-23	72 - 127	100	56 / 56	minus

Contig Sequence (978 bp)

>U35_9065 978 Hv_44K_v2
GGTTCGACACGCCTCGCCATGGCATCCCGCACTCAAGCAGGCCGTCACCGACGACCTCGA
CCGTTTCCTGAAGCGGAAGGAGTACTACCGGCGGATCGGCAAGGCTTGGAAGCGCGGCTA
TCTGCTCTTCGGCCCACCTGGGACCGGCAAGTCTAGTCTTGTCGCCGCCATGGCCAACTA
CCTCCGGTTCAACCTCTACGACCTCGACCTCTCCGAGGTGCGCCTCAACTCGGCGCTTCA
GAGGCTGCTTATCGCCATGCCCAACAAATCCATCCTCGTCATCGAGGACATCGACTGCTG
CTTCGACGCCAAGTCGAGGGAGGACCGCACGATGCCTGTGCCGGCCGACGACGGCACTTC
ATCAGACGACGACGTCCCGGAGGACAAAGCCCACCACCCGGGACCGCGCCAACAGCAGAC
CATAACCCTGTCCGGGCTGCTCAACTTCATCGACGGGCTGTGGTCGACGAGCGGCGAGGA
GCGCATCATCATGTTCACCACCAACTACAAGGACCGGCTTGACCCGGCACTGCTGCGGCC
GGGGCGCATGGACATGCACATCTACATGGGCTACTGCTGCTGGGAGGCGTTCAAGACATT
GGCCAGGAATTATCACCTCGTGGACGACCATGCTCTGTTCCCAGAGATAAAGGAACTGCT
TGCAGCGGTGGAGGTGACGCCGGCCGAGGTGTCCGAGATGCTGCTGCGGAGCGAAGACGC
CGACGTTGCGCTACGGGTGCTGACGGAGTTCCTCCAGGACAAGAGACGCAAGGCAAGAAA
AGAAGCAACAGAAATCAAGATCGGCGTAGCAGAGAAGGCAATGTAGCACTAGTATTCTTC
AGTGTCAGCATCCCCATTAACCGGAGCATTTCATTTGAGTAGACTAAGTGATCGAGTATG
TGTCACAAAGGTAATCATCTATGCGGGAATAATGAGGCATCAATTGAACAAAAAAAAAAA
AAAAAGACTCGAGGGGGG

Homology of Contig U35_9065 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g38800.1	530	3e-131	protein\|AAA family ATPase, putative, expressed
Brachypodium v1_2	Bradi1g26100.1	529	2e-160
Arabidopsis v10	AT5G17760.1	505	5e-91	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr5:5860591-5862301 REVERSE LENGTH=505