barSeed - Barley Seed Development Database

Probe CUST_3078_PI390587928

Source Contig U35_11617

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3078_PI390587928	Hv_44K_v2	ATAACATGGTGATCATGCAGACGCTGCTGGGGGCCATGGCGATCAGCAGCCCGGTGTTCC	351	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63893.2	2291	2e-24	392 - 451	100	60 / 60	plus	ABC04823 ABC26033
MLOC	MLOC_63893.3	1911	2e-24	64 - 123	100	60 / 60	plus	ABC04823 ABC26033
MLOC	MLOC_63893.10	1915	2e-24	1254 - 1313	100	60 / 60	minus	ABC04823
MLOC	MLOC_63893.5	2446	2e-24	1785 - 1844	100	60 / 60	minus	ABC04823 ABC26033
MLOC	MLOC_63893.8	1786	2e-24	1463 - 1522	100	60 / 60	minus	ABC04823
MLOC	MLOC_63893.6	2284	2e-24	1630 - 1689	100	60 / 60	minus	ABC04823
MLOC	MLOC_63893.4	2431	2e-24	1784 - 1843	100	60 / 60	minus	ABC04823 ABC26033
MLOC	MLOC_63893.9	2075	2e-24	1421 - 1480	100	60 / 60	minus	ABC04823
MLOC	MLOC_63893.1	2616	2e-24	1896 - 1955	100	60 / 60	minus	ABC04823 ABC26033
JLOC1	JLOC1_41901.1	2656	8e-25	660 - 719	100	60 / 60	plus
Harvest21	ABC22835	560	3e-25	352 - 411	100	60 / 60	plus
Harvest35	U35_11617	561	3e-25	352 - 411	100	60 / 60	plus

Contig Sequence (561 bp)

>U35_11617 561 Hv_44K_v2
CACCCACACCACGCAACAAGAGAAGGGCACTGTCTCTCCCTCTCCCTCGTCTTCTCCGGC
CGGCCGCGGCGGCCATGGGCTCCCCGCTCTCCTCCTGGCCATGGGCGGGCCTCGGCGCGT
ACAAGTACCTGCTGTACGGGCCGCTGGTGGCGGGGGTGGCGCAGGCGTGGCGGGAGCAGG
GCGGCGCGCCGACGGACTCGTGGTGCCTCCACCTGCTGCTCCTGCTGGCGCTCCGCTCGC
TCACCCACCAGCTCTGGTTCTCCTACGCCAACATGCTCTTCTTCACCCGCCGCCGCCGCG
TCGTCCCGGACGGCGTCGACTTCGTCCAGATCGACGCCGAGTGGGACTGGGATAACATGG
TGATCATGCAGACGCTGCTGGGGGCCATGGCGATCAGCAGCCCGGTGTTCCCGGCGGTGA
GCGACCTCCGTGTGTGGGAGCCGCGGGGGTGGGCGGTGGCGCTGCTGCTGCACGTCGCCG
TCTCGGAGCCCGGGTTCCGGTGGGCACACAGGGCGCTGCACCGGGGCCCGCTCTTCAGCC
GGTACCACTCCAAGCACCACG

Homology of Contig U35_11617 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g44300.1	628	2e-73	protein\|WAX2, putative, expressed
Brachypodium v1_2	Bradi1g31140.1	627	9e-71
Arabidopsis v10	None