barSeed - Barley Seed Development Database

Probe CUST_30778_PI390587928

Source Contig U35_14100

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30778_PI390587928	Hv_44K_v2	TTCTTCCGTTGCTGCACTTGCTTAAGCAATCTTTCAGTTTCCTCTTATGCACTTTCGTGT	1471	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14013.1	1285	2e-24	80 - 139	100	60 / 60	minus	ABC00410 ABC00417 ABC00940 ABC00976
MLOC	MLOC_14013.2	1635	2e-24	80 - 139	100	60 / 60	minus	ABC00410 ABC00417 ABC00940 ABC00976
JLOC1	JLOC1_9542.1	2465	8e-25	2190 - 2249	100	60 / 60	plus
Harvest21	ABC00976	1546	3e-25	26 - 85	100	60 / 60	minus	ABC00976
Harvest35	U35_14100	1556	3e-25	1472 - 1531	100	60 / 60	plus

Contig Sequence (1556 bp)

>U35_14100 1556 Hv_44K_v2
CACCAAACCCGCCTGCCAACCCCAAATCTCCCACTGCAGCTCTCGAATCTTCCCCGAGCA
TCGACCATGTCGGCCTACTGCGGAAAGTACAAGGATGAGCTCATCAAGAACGCTGCCTAC
ATTGGCACCCCTGGCAAGGGTATCCTCGCTGCCGATGAGTCCACGGGCACCATCGGCAAG
CGCTTCGCCAGCATCAATGTTGAGAATGTTGAGGACAACCGTCGCGCCCTCCGTGAGCTC
CTCTTCTGCACCCCTGGTGCCCTTCAGTACCTCAGCGGTGTGATCCTCTTTGAGGAGACC
CTGTACCAGAGCACCAAGGGTGGCAAGCCGTTCGTTGACATCCTCAAGGAGGGCAATGTC
CTCCCAGGCATCAAGGTGGACAAGGGTACCGTCGAGCTCGCTGGAACCAACGGTGAGACC
ACCACCCAGGGCTTTGATGACCTTGGCAAGCGCTGCGCCAAGTACTACGAGGCTGGTGCC
CGCTTTGCCAAGTGGCGTGCCGTTCTCAAGATTGGCCCAACCGAGCCATCACAGCTTTCT
ATCAACCAGAATGCTCAGGGTCTGGCTCGTTATGCCATCATCTGCCAGGAGAACGGTCTG
GTGCCCATTGTCGAGCCTGAGATCCTTGTTGATGGACCTCATGACATTGACCGCTGTGCT
TACGTCACTGAGATGGTCCTTGCTGCCTGCTACAAGGCCCTCAACGACCAGCATGTCCTC
CTTGAGGGTACCCTCCTGAAGCCCAACATGGTTACCCCTGGTTCTGACGCCAAGAAGGTG
ACCCCCGAGGTCATTGCTGAGTACACCGTCCGCACCCTCCAGAGGACTGTCCCTGCTGCT
GTCCCTGCCATCGTCTTCCTCTCCGGTGGACAGAGCGAGGAGGAGGCAACCCTGAACCTG
AATGCCATGAACAAGCTCCAGACCAAGAAGCCCTGGAACCTTTCCTTCTCCTTCGGACGT
GCCCTCCAGCAGAGCACCCTCAAGGCCTGGTCTGGCAAGGCGGAGAACGAGGAGAAGGCC
AGGAAGGCGTTCCTGGTGAGGTGCAAGGCCAACTCCGAGGCCACCCTTGGCACCTACAAG
GGTGATGCCACCCTCGGCGAGGGTGCCTCTGAGAGCCTCCACGTCAAGGACTACAAGTAT
TGACCTGCCTTCGGTGGTATGGCCCGTTTGGGCGTCCTGCTTACCAGTATTATCGTTTGG
TTTTTCAGAGTCCTGATATATCCTTTGGATATCGAACCTAGTATGGAACCTGTGCTCTCA
AAATACCATAGGTAGTTTGTTTTTGGGGTCGAATATCCTGTTTTTGGAGTTGAATGCCAA
GTGGTACCGCATATCGTAAATTGGAGCAGCAGGTTTTGTTCTATGGTCCTGTAATTTGGC
TGCTACAATGGCAAAACCTGTTATATCTGCTGAGTAGTGATTACACATGTCTTGAGTTGC
TCTAAAAAAAAAAAAAAAAATCGGCTATTTTTTCTTCCGTTGCTGCACTTGCTTAAGCAA
TCTTTCAGTTTCCTCTTATGCACTTTCGTGTAGCNTCATAAATGTAAATTGCTTAA

Homology of Contig U35_14100 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g33380.1	359	protein\|fructose-bisphospate aldolase isozyme, putative, expressed
Brachypodium v1_2	Bradi2g58050.1	359
Arabidopsis v10	AT2G36460.1	358	Aldolase superfamily protein \| chr2:15296929-15298387 REVERSE LENGTH=358