barSeed - Barley Seed Development Database

Probe CUST_30773_PI390587928

Source Contig U35_14105

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30773_PI390587928	Hv_44K_v2	AAGAAGTCACAGAGAAAACAGTCGAGTGCAACTGCAAGATGGTGAAGCTTGCGTTTGGAA	24	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363660	979	2e-24	48 - 107	100	60 / 60	plus	ABC01308 ABC01310
MLOC	MLOC_55629.1	1084	2e-24	814 - 873	100	60 / 60	minus	ABC01308 ABC01310
JLOC1	JLOC1_35912.1	1157	8e-25	91 - 150	100	60 / 60	plus
Harvest21	ABC01308	798	3e-25	34 - 93	100	60 / 60	plus	ABC01308
Harvest35	U35_14105	789	3e-25	25 - 84	100	60 / 60	plus

Contig Sequence (789 bp)

>U35_14105 789 Hv_44K_v2
TCAGACTTCGAACTCTTTAGCCTGAAGAAGTCACAGAGAAAACAGTCGAGTGCAACTGCA
AGATGGTGAAGCTTGCGTTTGGAAGCTTCGGCGACTCGTTCAGCGCCACGTCCATCAGGT
CCTATGTCGCGGAGTTCATCGCCACCCTCCTCTTCGTGTTCGCCGGCGTCGGGTCCGCCA
TTTCCTACGGGCAACTGACGCAGGGTGGCGCACTGGACCCGGCTGGCCTTGTGGCGATCG
CCATCGCCCATGCCTTCGCCCTCTTCGTCGGCGTGGCGATGGCTGCCAACATCTCCGGCG
GCCACCTGAACCCCGCCGTCACGTTCGGCCTCGCCGTCGGCGGCCACGTCACCATCCTCA
CCGGGCTCTTCTACTGGGTCGCCCAGCTGCTCGGCGCCTCCGTGGCATGCCTCCTCCTGC
AGTTTGTCACCCACGCCCAGGCTATGCCGACGCACGCCGTGTCCGGCATCAGCGAGGTCG
AGGGCGTGGTGATGGAGATCGTGATCACCTTCGCGCTGGTGTACACGGTGTACGCGACGG
CGGCCGACCCCAAGAAGGGCTCCCTCGGCACCATCGCGCCCATGGCGATCGGCTTCATCG
TCGGCGCCAACATCCTCGCCGCCGGGCCCTTCAGCGGCGGCTCCATGAACCCGGCGCGCT
CCTTCGGGCCGGCCGTGGCGGCCGGCAACTTCTCCGGCCACTGGGTGTACCGGGTCGGGC
CACTCATTGGTGGCGGCCTCGCCGGGCTCGTCTACGGCGACGTGTTCATCGCCTCCTACC
AGCCGGTCG

Homology of Contig U35_14105 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g44080.1	249	4e-156	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi5g17690.1	249	2e-161
Arabidopsis v10	AT5G47450.1	250	3e-132	\| Symbols: ATTIP2;3, TIP2;3, DELTA-TIP3 \| tonoplast intrinsic protein 2;3 \| chr5:19248509-19249466 REVERSE LENGTH=250