barSeed - Barley Seed Development Database

Probe CUST_30771_PI390587928

Source Contig U35_14107

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30771_PI390587928	Hv_44K_v2	AGTGTTTCTATCGTGTATGTATGCATGTATCTGACTGACAGTTCTCCCGTGTTGGGTTCG	535	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73301.2	1586	7e-23	988 - 1044	100	57 / 57	minus	ABC01309 ABC36917 ABC37234
MLOC	MLOC_73301.1	1909	7e-23	1068 - 1124	100	57 / 57	minus	ABC01308 ABC01309 ABC36917 ABC37234
Harvest21	ABC36774	612	3e-25	536 - 595	100	60 / 60	plus
Harvest35	U35_14107	612	3e-25	536 - 595	100	60 / 60	plus

Contig Sequence (612 bp)

>U35_14107 612 Hv_44K_v2
GCGTCTCTCCCGACTCCGGCCAGCCACCCCCTTCTTCTTCTTCTTCTCTAGCGAGCTAGG
CTTGGAGGTGAGCGAAAATGCCGGTCAGCAGGATCGCCGTGGGGAGCCACCGGGAGGTGT
ACGAGGTCGGCGCCCTCAAGGCGGCGCTCGCCGAGTTCATCTCCACGCTCATCTTCGTCT
TCGCCGGCCAGGGCTCCGGCATGGCCTTCAGTAAGTTCTTCCCTGTGGTAGCTTAATCAG
GAACAATTAAGGTAGTAGTTGATTAGTACTCCAGTAATTTGCATCATGATAATGGATAGC
TAGTGCACGTACGACAAGAGAGGGGGAAAAAACTCCTGCTTTTGGTGACAAGTTATAAAT
GACAAGAAAGAAAGTAAAAGAAACACTTTATGATGAGGCGTTACCAGTAGCCTAGAGAAA
ATTGCCTCAGAAAGGAAGTCAGTAGGGTTTGATTGATTTGATACAGGCTTTTTAGGTTGT
ATGATTGGCGCACAATGACCAGTTTGCCCTTGGGATATCCATGTGGTGAATCATCAGTGT
TTCTATCGTGTATGTATGCATGTATCTGACTGACAGTTCTCCCGTGTTGGGTTCGTGGTC
GCAGGCAAGCTG

Homology of Contig U35_14107 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None