barSeed - Barley Seed Development Database

Probe CUST_30768_PI390587928

Source Contig U35_14110

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30768_PI390587928	Hv_44K_v2	TTGCTTGTGTAAAACCTGTGAATTCGTCCGCCCGAGTAATTTCAAGTTCAGTTGAGTTGG	1043	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73301.2	1586	2e-24	175 - 234	100	60 / 60	minus	ABC01309 ABC36917 ABC37234
MLOC	MLOC_73301.1	1909	2e-24	198 - 257	100	60 / 60	minus	ABC01308 ABC01309 ABC36917 ABC37234
JLOC1	JLOC1_48792.1	1925	8e-25	1488 - 1547	100	60 / 60	plus
Harvest21	ABC01306	1097	3e-25	1016 - 1075	100	60 / 60	plus
Harvest35	U35_14110	1129	3e-25	1044 - 1103	100	60 / 60	plus

Contig Sequence (1129 bp)

>U35_14110 1129 Hv_44K_v2
TCGAGCACTGTTGGCCTACACCAACTCACGCCACTCGTCTCTCCCGACTCCGGCCAGCCA
CCCCCTTCTTCTTCTTCTTCTCTAGCGAGCTAGGCTTGGAGGTGAGCGAAAATGCCGGTC
AGCAGGATCGCCGTGGGGAGCCACCGGGAGGTGTACGAGGTCGGCGCCCTCAAGGCGGCG
CTCGCCGAGTTCATCTCCACGCTCATCTTCGTCTTCGCCGGCCAGGGCTCCGGCATGGCC
TTCAGCAAGCTGAGCCCCGACGGCGTGGCGACGCCGGCCGGGCTGATCTCGGCGGCGATA
GCGCACGCGTTCGCGCTGTTCGTGGCGGTGTCGGTGGGCGCCAACATCTCGGGCGGGCAC
GTGAACCCGGCGGTGACCTTCGGCGCCTTCGTGGGCGGCAACATCACCCTCTTCCGCGGC
CTGCTCTACTGGGTGGCGCAGCTGCTGGGCTCCACCGCCGCCTGCTTCCTCCTCCGCTTC
TCCACCGGCGGGCTCCCCACCGGCACCTTCGGGCTCACCGGCATCGGCGCGTGGGAGGCG
GTGGTCCTGGAGATCGTCATGACCTTCGGGCTGGTGTACACGGTGTACGCCACCGCCGTC
GACCCCAAGAAGGGCAGCCTGGGCACCATCGCGCCCATCGCCATCGGCTTCATCGTCGGC
GCCAACATCCTCGTCGGCGGCGCCTTCTCCGGCGCGTCCATGAACCCCGCCGTCTCCTTC
GGCCCCGCCCTCGTCAGCTGGGAGTGGGGGTACCAGTGGGTGTACTGGGTCGGCCCCCTC
ATCGGCGGCGGCCTCGCCGGCGTCATCTACGAGCTGCTCTTCATCTCCCGCACCCACGAG
CAGCTCCCCACCACCGACTACTAAGCTCACCGCCGCCTGCCCCCCGCCCGCCCGTCCGTC
CGTGTGGTCGATCGCGTCTCCCCTTGCTTCCAGTCATGAGTCGTTTAAGTTTGCTTTGAA
TGAATGAATCCATCCCATTCCCAGGGTCGATCGGTCCATCAGTTTGTGGTGCTGTGAAAC
CTGTGACGATCGACCCTGTCAATTTGCTTGTGTAAAACCTGTGAATTCGTCCGCCCGAGT
AATTTCAAGTTCAGTTGAGTTGGAAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14110 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g05290.1	251	8e-133	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi1g75290.1	251	7e-138
Arabidopsis v10	AT2G36830.1	251	3e-110	\| Symbols: GAMMA-TIP, TIP1;1, GAMMA-TIP1 \| gamma tonoplast intrinsic protein \| chr2:15445490-15446336 FORWARD LENGTH=251