- Probe CUST_30766_PI390587928
- Source Contig U35_14112
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_30766_PI390587928 | Hv_44K_v2 | CTTCTTCTTCTTCTTCTCTAGCGAGCTAGGCTTGGAGGTGAGCGAAAATGCCGGTCAGCA | 45 | GeneList: plum2 MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.045 | 0.134 | 1.391 | 1.780 | 1.185 | 1.229 |
Raw | 25.508 | 103.583 | 1092.790 | 2069.319 | 520.081 | 590.466 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_73301.3 | 1632 | 2e-24 | 951 - 1010 | 100 | 60 / 60 | minus | ABC01308 ABC01309 ABC36917 ABC37234 |
MLOC | MLOC_73301.2 | 1586 | 2e-24 | 1490 - 1549 | 100 | 60 / 60 | minus | ABC01309 ABC36917 ABC37234 |
MLOC | MLOC_73301.1 | 1909 | 2e-24 | 1570 - 1629 | 100 | 60 / 60 | minus | ABC01308 ABC01309 ABC36917 ABC37234 |
JLOC1 | JLOC1_48792.1 | 1925 | 8e-25 | 509 - 568 | 100 | 60 / 60 | plus | |
Harvest21 | ABC37265 | 454 | 3e-25 | 19 - 78 | 100 | 60 / 60 | plus | |
Harvest21 | ABC36774 | 612 | 3e-25 | 31 - 90 | 100 | 60 / 60 | plus | |
Harvest21 | ABC01320 | 730 | 3e-25 | 16 - 75 | 100 | 60 / 60 | plus | |
Harvest21 | ABC01306 | 1097 | 3e-25 | 37 - 96 | 100 | 60 / 60 | plus | |
Harvest35 | U35_37667 | 698 | 3e-25 | 32 - 91 | 100 | 60 / 60 | plus | |
Harvest35 | U35_14116 | 730 | 3e-25 | 16 - 75 | 100 | 60 / 60 | plus | |
Harvest35 | U35_14115 | 905 | 3e-25 | 38 - 97 | 100 | 60 / 60 | plus | |
Harvest35 | U35_14112 | 720 | 3e-25 | 46 - 105 | 100 | 60 / 60 | plus | |
Harvest35 | U35_14110 | 1129 | 3e-25 | 65 - 124 | 100 | 60 / 60 | plus | |
Harvest35 | U35_14107 | 612 | 3e-25 | 31 - 90 | 100 | 60 / 60 | plus |
Contig Sequence (720 bp)
>U35_14112 720 Hv_44K_v2 ACCAACTCACGCCACTCGTCTCTCCCGACTCCGGCCAGCCACCCCCTTCTTCTTCTTCTT CTCTAGCGAGCTAGGCTTGGAGGTGAGCGAAAATGCCGGTCAGCAGGATCGCCGTGGGGA GCCACCGGGAGGTGTACGAGGTCGGCGCCCTCAAGGCGGCGCTCGCCGAGTTCATCTCCA CGCTCATCTTCGTCTTCGCCGGCCAGGGCTCCGGCATGGCCTTCAGCAAGCTGAGCCCCG ACGGCGTGGCGACGCCGGCCGGGCTGATCTCGGCGGCGATAGCGCACGCGTTCGCGCTGT TCGTGGCGGTGTCGGTGGGCGCCAACATCTCGGGCGGGCACGTGAACCCACCGGCACCTT CGGGCTCACCGGCATCGGCGCGTGGGAGGCGGTGGTCCTGGAGATCGTCATGACCTTCGG GCTGGTGTACACGGTGTACGCCACCGCCGTCGACCCCAAGAAGGGCAGCCTGGGCACCAT CGCGCCCATCGCCATCGGCTTCATCGTCGGCGCCAACATCCTCGTCGGCGGCGCCTTCTC CGGCGCGTCCATGAACCCCGCCGTCTCCTTCGGCCCCGCCCTCGTCAGCTGGGAGTGGGG GTACCAGTGGGTGTACTGGGTCGGCCCCCTCATCGGCGGCGGCCTCGCCGGCGTCATCTA CGAGCTGCTCTTCATCTCCCGCACCCACGAGCAGCTCCCCACCACCGACTACTAAGCTCA
Homology of Contig U35_14112 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | LOC_Os03g05290.1 | 251 | 5e-75 | protein|aquaporin protein, putative, expressed |
Brachypodium v1_2 | Bradi1g75290.1 | 251 | 4e-79 | |
Arabidopsis v10 | AT2G36830.1 | 251 | 2e-62 | | Symbols: GAMMA-TIP, TIP1;1, GAMMA-TIP1 | gamma tonoplast intrinsic protein | chr2:15445490-15446336 FORWARD LENGTH=251 |