- Probe CUST_30763_PI390587928
- Source Contig U35_14115
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30763_PI390587928 | Hv_44K_v2 | CTTCTTCTTCTTCTTCTCTAGCGAGCTAGGCTTGGAGGTGAGCGAAAATGCCGGTCAGCA | 37 | GeneList: plum2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.049 | 0.130 | 1.437 | 1.878 | 1.260 | 1.262 |
| Raw | 28.139 | 103.671 | 1120.218 | 2174.254 | 558.024 | 602.879 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_73301.3 | 1632 | 2e-24 | 951 - 1010 | 100 | 60 / 60 | minus | ABC01308 ABC01309 ABC36917 ABC37234 |
| MLOC | MLOC_73301.2 | 1586 | 2e-24 | 1490 - 1549 | 100 | 60 / 60 | minus | ABC01309 ABC36917 ABC37234 |
| MLOC | MLOC_73301.1 | 1909 | 2e-24 | 1570 - 1629 | 100 | 60 / 60 | minus | ABC01308 ABC01309 ABC36917 ABC37234 |
| JLOC1 | JLOC1_48792.1 | 1925 | 8e-25 | 509 - 568 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC37265 | 454 | 3e-25 | 19 - 78 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC36774 | 612 | 3e-25 | 31 - 90 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01320 | 730 | 3e-25 | 16 - 75 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01306 | 1097 | 3e-25 | 37 - 96 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_37667 | 698 | 3e-25 | 32 - 91 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14116 | 730 | 3e-25 | 16 - 75 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14115 | 905 | 3e-25 | 38 - 97 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14112 | 720 | 3e-25 | 46 - 105 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14110 | 1129 | 3e-25 | 65 - 124 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14107 | 612 | 3e-25 | 31 - 90 | 100 | 60 / 60 | plus |
Contig Sequence (905 bp)
>U35_14115 905 Hv_44K_v2 ACGCCACTCGTCTCTCCCGACTCCGGCCAGCCACCCCCTTCTTCTTCTTCTTCTCTAGCG AGCTAGGCTTGGAGGTGAGCGAAAATGCCGGTCAGCAGGATCGCCGTGGGGAGCCACCGG GAGGTGTACGAGGTCGGCGCCCTCAAGGCGGCGCTCGCCGAGTTCATCTCCACGCTCATC TTCGCCGGCCAGGGCTCCGGCATGGCCTTCAGCAAGCTGAGCCCCGACGGCGTGGCGACG CCGGCCGGGCTGATCTCGGCGGCGATAGCGCACGCGTTCGCGCTGTTCGTGGCGGTGTCG GTGGGCGCCAACATCTCGGGCGGGCACGTGAACCCGGCGGTGACCTTCGGCGCCTTCGTG GGCGGCAACATCACCCTCTTCCGCGGCCTGCTCTACTGGGTGGCGCAGCTGCTGGGCTCC ACCGCCGCCTGCTTCCTCCTCCGCTCCTCCACCGGCGGGCTCCCCACCGGCACCTTCGGG CTGACCGGCATCGGCGCGTGGGAGGCGGTGGTCCTCTTCATCTCCCGCACCCACGAGCAG CCCCTGATCTGCTCCGGTCGCCGGCCCCGATCCACGCCAGATACGATCTGCTCCCCGCGC CGCCTCCCCGCTCCTCCCGCCGGTCGCCGACCCCCGTCCACGCTGGTTCCGATCTGCTCC CCGCGCCGCCGCCCCGCTCCTCCCGCCGGTCGCCGGCCCCGATCCACGAGGAGCCCGAGT TGGAGCCGGATTCCAAGTCTTGAAGCCACCTCGGTGACGCAGCGACGCAACGGACTCCCG ACGCGGTCGGCTGCGAGGCGCACTGCTGCGAGCCGCCGGTCAAGCCCAATGGTGAAGCCG CCAAGGAAGAGGCGCTGGACAGCGTCGGGATCCACCAGAGGAGGGGCTCCGCCGCCAGAG TGACG
Homology of Contig U35_14115 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g05290.1 | 251 | 4e-52 | protein|aquaporin protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g75290.1 | 251 | 2e-54 | |
| Arabidopsis v10 | None |