barSeed - Barley Seed Development Database

Probe CUST_30761_PI390587928

Source Contig U35_14117

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30761_PI390587928	Hv_44K_v2	GGAGTTTGGTAAGGACGAAGTCATTAAACTAATCTGAGAGATCCTCTCGTTGCTGTTCAA	777	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18664.1	2006	3e-22	364 - 422	98	58 / 59	minus	ABC01204 ABC01205 ABC01206 ABC01207 ABC01213 ABC47677 ABC49921
JLOC1	JLOC1_12920.1	1658	1e-22	24 - 82	98	58 / 59	minus
JLOC1	JLOC1_12921.1	2823	1e-22	2394 - 2452	98	58 / 59	plus
Harvest21	ABC01206	2566	8e-21	2515 - 2566	100	52 / 52	plus	ABC01206
Harvest35	U35_14117	859	3e-25	778 - 837	100	60 / 60	plus

Contig Sequence (859 bp)

>U35_14117 859 Hv_44K_v2
GCCTCAAGCTTGACGACAGCGAGGAAGAGAAGAAAAGGAAGGAGGAGCTCAAGGAGAAGT
TTGAGGGGCTCTGCAAGGTGATCAAGGATGTGCTGGGTGACAGGGTCGAGAAGGTTATTG
TCTCTGACCGCGTCGTTGACTCTCCATGCTGCCTCGTCACGGGCGAGTACGGCTGGACTG
CCAACATGGAGAGGATCATGAAGGCCCAGGCCCTGAGGGACACGAGCATGGGCGGCTACA
TGTCGAGCAAGAAGACGATGGAGATCAACCCTGAGAACGCCATCATGGAGGAGCTGCGCA
AGCGCGCCGACGCGGACAAGAACGACAAGTCGGTCAAGGACCTGGTGATGCTGCTGTTCG
AGACCTCGCTGCTCACCTCTGGCTTCAGCCTCGACGACCCCAACACCTTCGGCACCAGGA
TCCACCGCATGCTCAAGCTGGGCCTGAGCATCGACGAGGATGACGAGCCTGCTGAGGCTG
ACACGGACATGCCGCCGCTGGAGGAGGATGCCGGCGAGAGCAAGATGGAGGAGGTCGACT
AGGCGTGTGCATTTATTAGCCTGCTAGCTCATCTTTTGGTTACTGTCGCGTGGTCGGTTT
GTCTTTGTGGTTTACTGTGCCTAGCCTGCACTAATGGGGCTAGGGGATGCTGGTCTATGG
AGTGCCCGGAACTGCGTATCGTAATCGTTGCTTATATATATCATCTTAGTATCTACCAGC
TTAATTGATTAAGCTATTTCTGTTTAATCTGGCTGGTTTCTCTGTTCAGTTGTTTCTGGA
GTTTGGTAAGGACGAAGTCATTAAACTAATCTGAGAGATCCTCTCGTTGCTGTTCAANNN
ANAAAAAAAAAAAAAAAAA

Homology of Contig U35_14117 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g39140.3	615	3e-78	protein\|heat shock protein, putative, expressed
Brachypodium v1_2	Bradi3g39620.1	700	5e-83
Arabidopsis v10	AT5G56010.1	699	3e-74	\| Symbols: HSP81-3, Hsp81.3, AtHsp90-3, AtHsp90.3 \| heat shock protein 81-3 \| chr5:22681410-22683911 FORWARD LENGTH=699