barSeed - Barley Seed Development Database

Probe CUST_30758_PI390587928

Source Contig U35_14120

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30758_PI390587928	Hv_44K_v2	TGGTTTCTCTGTTCAGTTGTTTCTGGAGTTTGGTAAGGACGAAGTCTTTAAACTAAAAAA	2499	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355136	2539	3e-22	2458 - 2513	100	56 / 56	plus	ABC01204 ABC01205 ABC01206 ABC01207 ABC01213 ABC47677 ABC49921
MLOC	MLOC_18664.1	2006	3e-22	391 - 446	100	56 / 56	minus	ABC01204 ABC01205 ABC01206 ABC01207 ABC01213 ABC47677 ABC49921
JLOC1	JLOC1_12920.2	1710	1e-22	15 - 70	100	56 / 56	minus
JLOC1	JLOC1_12920.1	1658	1e-22	51 - 106	100	56 / 56	minus
JLOC1	JLOC1_12921.1	2823	1e-22	2370 - 2425	100	56 / 56	plus
Harvest21	ABC01207	866	3e-25	40 - 99	100	60 / 60	minus	ABC01207
Harvest21	ABC01206	2566	2e-21	2491 - 2546	98	55 / 56	plus	ABC01206
Harvest35	U35_14120	2598	3e-25	2500 - 2559	100	60 / 60	plus
Harvest35	U35_14117	859	2e-21	754 - 809	98	55 / 56	plus

Contig Sequence (2598 bp)

>U35_14120 2598 Hv_44K_v2
ACTATATAACCTTCCCCACCGCGCCCGCCTTCTCCATCCTCGCGACGCAGAGCCCGAGAA
CCCCGCTCCAAAGCCCTAACCCTAGGCCATCCCCTCTCCCTCCCCTCAACCCTCGTCGAC
TCCGCGCGCGCCTGCGTTCCAGGAGCTTCCGCTGCCGGCGGCGCCATGGCCTCAGAGACC
GAGACCTTCGCCTTCCAGGCGGAGATCAACCAGCTGCTCTCGCTCATCATCAACACCTTC
TACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACGCCTCCGATGCGTTGGAT
AAGATCAGGTTTGAGAGCCTCACTGACAAGAGCAAGCTGGATGCTCAGCCAGAGCTGTTC
ATCCACATTATCCCTGACAAGGCCACCAACACACTCACCCTTATCGACAGTGGCATTGGT
ATGACCAAGTCAGACCTCGTGAACAACCTTGGTACCATTGCAAGGTCTGGCACCAAGGAT
TTCATGGAGGCATTGGCTGCTGGTGCCGATGTGTCCATGATTGGTCAGTTTGGTGTTGGT
TTCTACTCTGCTTACCTTGTTGCTGAGAGAGTCGTTGTGACCAGCAAGCACAACGATGAC
GAGCAGTATGTGTGGGAGTCCCAGGCTGGTGGCTCCTTCACTGTGACACGTGATACTACT
GGAGAGCCCCTTGGAAGGGGTACTAAGATCACCCTCTACCTCAAGGACGATCAGTTGGAG
TACCTTGAGGAGCGTCGCCTTAAGGATCTGGTGAAGAAGCACTCCGAGTTCATCAGCTAT
CCCATCTCCCTCTGGACGGAGAAGACCACTGAAAAGGAAATTTCTGACGATGAAGATGAG
GATGAGAAGAAGGATACTGAGGAGGGCAAGGTTGAGGAAATTGATGAAGAGAAGGAAGAA
AAGGAGAAGAAAAAGAAGAAGATCAAGGAGGTTTCTCACGAGTGGAACCTGATCAACAAG
CAGAAGCCTATCTGGATGAGGAAGCCTGAGGAGATCACCAAGGATGAGTATGCTGCCTTC
TACAAGAGCCTGACAAACGACTGGGAGGAGCACCTTGCCGTCAAGCACTTCTCTGTGGAG
GGTCAGCTTGAGTTCAAGGCCGTCCTCTTTGTTCCCAAGAGGGCCCCCTTTGACCTCTTT
GACACGAGGAAGAAGCTCAACAATATCAAGCTCTACGTGCGCCGTGTCTTCATCATGGAT
AACTGTGAGGAGCTGATCCCAGAGTGGCTGAGCTTTGTCAAGGGCATTGTTGACTCTGAG
GATCTTCCCCTGAACATCTCCCGTGAGACACTCCAGCAGAACAAGATCCTCAAGGTGATC
CGCAAGAACCTTGTGAAGAAGTGCATCGAGCTCTTCTTCGAGATTGCCGAGAACAAGGAG
GACTACACCAAGTTCTATGAGGCTTTCTCCAAGAACCTCAAGCTCGGCGTCCACGAAGAC
TCCACCAACAGGACCAAGCTTGCGGAGCTCCTGAGGTACCACTCCACCAAGAGTGGTGAT
GAGCTTACCAGCCTCAAGGACTATGTGACGAGGATGAAGGAGGGCCAGAACGACATCTAC
TACATCACCGGTGAGAGCAAGAAGGCTGTGGAGAACTCTCCCTTCCTTGAGAAGCTGAAG
AAGAAGGGCTACGAGGTGCTGTACATGGTTGACGCCATTGATGAGTACTCCATTGGCCAG
CTCAAGGAGTTTGAGGGAAAGAAGCTGGTCTCTGCCACCAAGGAGGGCCTCAAGCTTGAC
GACAGCGAGGAAGAGAAGAAAAGGAAGGAGGAGCTCAAGGAGAAGTTTGAGGGGCTCTGC
AAGGTGATCAAGGATGTGCTGGGTGACAGGGTCGAGAAGGTTATTGTCTCTGACCGCGTC
GTTGACTCTCCATGCTGCCTCGTCACGGGCGAGTACGGCTGGACTGCCAACATGGAGAGG
ATCATGAAGGCCCAGGCCCTGAGGGACACGAGCATGGGCGGCTACATGTCGAGCAAGAAG
ACGATGGAGATCAACCCTGAGAACGCCATCATGGAGGAGCTGCGCAAGCGCGCCGACGCG
GACAAGAACGACAAGTCGGTCAAGGACCTGGTGATGCTGCTGTTCGAGACCTCGCTGCTC
ACCTCTGGCTTCAGCCTCGACGACCCCAACACCTTCGGCACCAGGATCCACCGCATGCTC
AAGCTGGGCCTGAGCATCGACGAGGATGACGAGCCTGCTGAGGCTGACACGGACATGCCG
CCGCTGGAGGAGGACGCCGGCGAGAGCAAGATGGAGGAGGTCGACTAGGCGTGTGCATTT
GCTGCTATCCAAGTCGTAGAGCTAGCTCATCTTTTGGTTACTGTCGCGTGGTCGGTTTGT
CTTTGTGGTTTACTGTGCCTAGCCTGGACTGATGGGGCTAGGGGATGCTGGTCTATGGAG
TGCCCGGAACTGCGTATCGTAATCGTTGCTTATATATATCATCGTAGTATCTACCAGCTT
AATTGATTAAGCTATTTCTGTTTAATCAAAAAAAAAAGCTGGTTTCTCTGTTCAGTTGTT
TCTGGAGTTTGGTAAGGACGAAGTCTTTAAACTAAAAAAAAAAAAAAAAACGTTGCTGTT
CAAAAAAAAAAAAAAAAA

Homology of Contig U35_14120 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g39140.1	700	protein\|heat shock protein, putative, expressed
Brachypodium v1_2	Bradi3g39630.1	700
Arabidopsis v10	AT5G56010.1	699	\| Symbols: HSP81-3, Hsp81.3, AtHsp90-3, AtHsp90.3 \| heat shock protein 81-3 \| chr5:22681410-22683911 FORWARD LENGTH=699