barSeed - Barley Seed Development Database

Probe CUST_30752_PI390587928

Source Contig U35_14126

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30752_PI390587928	Hv_44K_v2	TCTTCTTCGAGATCGCCGAGAGCAGCAAGGAGGACTACGCCAAGTTCTACGAGGCCTTCT	804	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5618.2	2805	2e-24	1148 - 1207	100	60 / 60	minus	ABC01204 ABC01205 ABC01206 ABC01207 ABC01213
MLOC	MLOC_5618.1	2323	2e-24	1219 - 1278	100	60 / 60	minus	ABC01204 ABC01205 ABC01206 ABC01207 ABC01213
JLOC1	JLOC1_3630.1	2847	8e-25	1548 - 1607	100	60 / 60	plus
Harvest21	ABC27833	669	3e-25	236 - 295	100	60 / 60	plus
Harvest21	ABC01202	1194	3e-25	798 - 857	100	60 / 60	plus
Harvest35	U35_14126	1237	3e-25	805 - 864	100	60 / 60	plus

Contig Sequence (1237 bp)

>U35_14126 1237 Hv_44K_v2
GGTCGCCGAGAAGGTCGTGGTCACCACTAAGCACAACGACGACGAGCAGTACGTGTGGGA
GTCGCAGGCGGGCGGATCCTTCACCGTCACCCTTGACACGGAGGGCGAGCGGCTCGGCCG
CGGCACCAAGATCACGCTCTTCCTCAAGGATGACCAGCTCGAGTACCTGGAGGAGCGCCG
CCTCAAGGACCTCGTCAAGAAGCACTCGGAGTTCATCAGCTACCCCATCTACCTCTGGAC
CGAGAAGACCACCGAGAAGGAGATCAGCGACGACGAAGACGAAGATGCCTCTGCCTCGGA
CAAGAAGGAGGGCGAGGTCGAGGAGGTCGACGACGACTCCGAGAAGAAGGACAACGAAAA
GAAGAAGAAGAAGGTGAAGGAGGTGAGCCACGAGTGGGTGCAGATCAATAAGCAGAAGCC
CATCTGGCTGCGCAAGCCGGAGGAGATCAGCAAGGACGAGTACGCGTCCTTCTACAAGAG
CATCACCAACGACTGGGAGGAGCACCTCGCCGTGAAGCACTTCTCGGTGGAGGGGCAGCT
GGAGTTCAAAGGCGGTGCTCTTCGTGCCCCGCCGCGCCCCCTTCGACCTCTTCGACACCC
GCAAGAAGATGAACAACATCAAGCTCTACGTGCGCCGCGTCTTCATCATGGACAACTGCG
AGGAGCTCATCCCGGAGTGGCTGGGATTCGTCAAGGGCGTCGTCGACTCGGACGACCTGC
CCCTCAACATCTCCCGGGAGACGCTGCAGCAGAACAAGATCCTCAAGGTCATCCGCAAGA
ACCTCGTCAAGAAGTGCATCGAGCTCTTCTTCGAGATCGCCGAGAGCAGCAAGGAGGACT
ACGCCAAGTTCTACGAGGCCTTCTCCAAGAACCTCAAGCTGGGCGTGCATGAGGACTCGC
AGAACCGCGCCAAGCTCGCCGACCTGCTCCGGTACCACTCGACGAAGAGCGGCGACGAGC
TCACCAGCCTCAAGGACTACGTCACCCGGATGAAGGAGGGGCAGAAGGACATCTACTACA
TCACCGGCGAGAGCCGCAAGGCCGTCGAGAACTCGCCCTTCCTCGAGCGCCTCAAGAAGC
GCGGCTACGAGGTGCTCTTCATGGTGGACGCCATCGACGAGTACGCTGTCGGCCAGCTCA
AGGAGTACGACGGCAAGAAGCTCGTCTCCGCCACCAAGGAGGGCCTCAAGCTCGACGAGG
AGACAGAGGAAGAGAAGAAGCGCAAGGAGGAAAAGAA

Homology of Contig U35_14126 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g01740.1	704	6e-178	protein\|heat shock protein, putative, expressed
Brachypodium v1_2	Bradi5g02037.1	711	0.0
Arabidopsis v10	AT5G52640.1	705	1e-171	\| Symbols: HSP81-1, ATHS83, HSP81.1, HSP83, ATHSP90.1, AtHsp90-1, HSP90.1 \| heat shock protein 90.1 \| chr5:21352542-21355147 FORWARD LENGTH=705