barSeed - Barley Seed Development Database

Probe CUST_30741_PI390587928

Source Contig U35_26108

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30741_PI390587928	Hv_44K_v2	TCGGACATCGACTACATGGACAATTACCAGGACTTCACGCTGGATCCGGTGAACTACCCG	845	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.981	2.320	1.731	0.498	0.227	0.199
Raw	65.943	123.054	75.900	29.699	4.123	4.407

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375658	2684	2e-24	1002 - 1061	100	60 / 60	plus	ABC07937 ABC07938 ABC12639
MLOC	MLOC_11993.1	2435	6e-24	1608 - 1666	100	59 / 59	minus	ABC07937 ABC07938 ABC12639
MLOC	MLOC_11993.2	2436	6e-24	1608 - 1666	100	59 / 59	minus	ABC07937 ABC07938 ABC12639
MLOC	MLOC_11993.3	2529	6e-24	1608 - 1666	100	59 / 59	minus	ABC07937 ABC07938 ABC12639
Harvest21	ABC25803	905	3e-25	846 - 905	100	60 / 60	plus
Harvest35	U35_26108	905	3e-25	846 - 905	100	60 / 60	plus

Contig Sequence (905 bp)

>U35_26108 905 Hv_44K_v2
ACTAGTGGATCCAAAGCGCCGGCGGGACGACGGAATTTGGGCCCGATGTGAAGAGTCTCA
GCCTAACGGCAAGTCTTGAGACAGATAGCCGGCTACGCGTGCGCATCACCGATGCTGACC
ATCAGCGATGGGAGGTTCCCCAAGACGCCATCCCACGCCCGGCGGCGCCAGGGCCAGAGC
CAAAGGGCGTCTTGCTCGACTCACCGGGCAGTGCCTCCATGCCGAGCCATAACACCATGT
CCAGCCCGTCTTCGGACCTGAACTTCACCATCCACACCAGCCCGTTCCGCTTCACCGTCT
CCCGTCGCTCGACGCATGACATCCTCTTTGACACTTCTGCCAACCTTGTCTTCAAGGACC
GGTACTTGGAGGTGACATCGGCGCTGCCGGCTGACCGAGCATCCCTGTATGGGCTTGGCG
AGCAGAAGAAACAGACGTTCCGGCTACAACACAATGACAGTTTCACACTGTGGAACGAGG
ACGTGACGTGGTCCGACCAACTGGACCTCAACCTCTACGGCTCGCACCCGTTCTACATGG
ACGTGCGCTCCGGCGGTGCCGCGCATGGCGTGCTCCTCCTAAACAGCAATGGGATGGACA
TACTGTACGGCGGATCCCACGTCACCTACAAGGTGATCGGCGGTGTGCTAGACTTCTACT
TCTTCGCCGGCCCATCCCCCCTCGCCGTCGTCGACCAGTACACACAGCTCATCGGCCGCC
CTGCCCCCATGCCCTACTGGTCATTCGGGTTCCACCAGTCCAGGTATGGCTACAAGAACG
TGGCTGATCTGGATGGCGTGGTCGCCGGCTACGCCAAGGCCAAGATCCCATTGGACGCGA
TCTGGTCGGACATCGACTACATGGACAATTACCAGGACTTCACGCTGGATCCGGTGAACT
ACCCG

Homology of Contig U35_26108 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g46284.1	886	1e-150	protein\|glycosyl hydrolase, family 31, putative, expressed
Brachypodium v1_2	Bradi2g19280.1	842	3e-136
Arabidopsis v10	AT5G11720.1	902	2e-117	Glycosyl hydrolases family 31 protein \| chr5:3776840-3780025 FORWARD LENGTH=902