barSeed - Barley Seed Development Database

Probe CUST_30739_PI390587928

Source Contig U35_14130

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30739_PI390587928	Hv_44K_v2	GGTGTCGTTTGGCGATGTACTGTGGAATGTAAGAAGTGAAGGAAGTTTGTTCCCAAAAAA	718	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5618.2	2805	9e-22	42 - 96	100	55 / 55	minus	ABC01204 ABC01205 ABC01206 ABC01207 ABC01213
MLOC	MLOC_5618.1	2323	9e-22	113 - 167	100	55 / 55	minus	ABC01204 ABC01205 ABC01206 ABC01207 ABC01213
JLOC1	JLOC1_3630.1	2847	5e-22	2659 - 2713	100	55 / 55	plus
Harvest21	ABC01205	577	3e-25	507 - 566	100	60 / 60	plus	ABC01205
Harvest21	ABC01213	787	2e-22	15 - 69	100	55 / 55	minus	ABC01213
Harvest21	ABC38356	565	8e-21	61 - 115	98	54 / 55	minus
Harvest35	U35_14130	789	3e-25	719 - 778	100	60 / 60	plus
Harvest35	U35_48498	523	2e-22	31 - 85	100	55 / 55	minus
Harvest35	U35_42601	565	8e-21	61 - 115	98	54 / 55	minus

Contig Sequence (789 bp)

>U35_14130 789 Hv_44K_v2
AGGAGACAGAGGAAGAGAAGAAGCGCAAGGAGGAAAAGAAGGCCGCGTTCGAGGGCCTCT
GCAAGACCATCAAGGACATCCTCGGCGACCGGGTGGAGAAGGTGGTCGTCTCCGACCGCA
TCGTCGACTCGCCCTGCTGCCTCGTCACCGGCGAGTACGGGTGGACGGCCAACATGGAGC
GGATCATGAAGGCGCAGGCCCTCCGTGACAGCAGCATGGGCGCCTACATGTCCTCCAAGA
AGACCATGGAGATCAACCCGGAGAACGGCATCATGGAGGAGCTCCGCAAGCGCGCCGACG
CCGACAAGAACGACAAGTCCGTCAAGGACCTCGTCATGCTGCTCTTCGAGACGGCCCTGC
TCACCTCCGGCTTCAGCCTCGACGACCCCAACACCTTCGCCGCCAGGATCCACCGCATGC
TCAAGCTCGGACTCAACATCGATGATCAGGCCGATGCCGAGGAGGAGGACGCCGACATGC
CCTCGTTGGAGGAGGAGGGCGCCGAGGAGAGCAAGATGGAGGAGGTCGACTGAACCTGAA
CATGAACCTGAAGAAGATGAAACAAACAGAGTCTGTCTGTCTGTCGTGTGTCTGCCCATG
GTTAGAGTTGAGTTCTGGTGGTCGTTTGATCGTTGCGTGTCCAGTTAGAAGTTGTTATTA
GAGTGCCAGTGTCGCCGTGTTTGATTCTCGGGGTCAAATGTAAGTGTTTCACTCATTTGG
TGTCGTTTGGCGATGTACTGTGGAATGTAAGAAGTGAAGGAAGTTTGTTCCCAAAAAAAA
AAAAAAAAA

Homology of Contig U35_14130 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g01740.1	704	2e-77	protein\|heat shock protein, putative, expressed
Brachypodium v1_2	Bradi5g02037.1	711	2e-79
Arabidopsis v10	AT5G52640.1	705	2e-75	\| Symbols: HSP81-1, ATHS83, HSP81.1, HSP83, ATHSP90.1, AtHsp90-1, HSP90.1 \| heat shock protein 90.1 \| chr5:21352542-21355147 FORWARD LENGTH=705