barSeed - Barley Seed Development Database

Probe CUST_30738_PI390587928

Source Contig U35_14131

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30738_PI390587928	Hv_44K_v2	GTCTCTTGGATTCCCAGACAGCTTTTGGAAGCTGAACACATGGCCTATGTTTTCGACAAA	886	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356633	3020	2e-23	2861 - 2918	100	58 / 58	plus	ABC03042 ABC03043
JLOC1	JLOC1_47343.1	1966	1e-23	1619 - 1676	100	58 / 58	plus
Harvest35	U35_14131	960	3e-25	887 - 946	100	60 / 60	plus

Contig Sequence (960 bp)

>U35_14131 960 Hv_44K_v2
CTAACCTTCTTCTGCTTAGGGAACAGGGAGGTGAAGAGGAGTGGGGAGTATGAACCCGCT
GATCGTCCATTGCCTGGGTCAGCCTATGAAAGGGCACAAAACGCTCGGCGGTTCATGATC
TATGTTCACTCCAAGATGATGATAGTTGATGACGAGTACATCATCGTCGGATCTGCCAAC
ATCAACCAGCGGTCAATGGACGGGGGGAGGGACTCCGAGATTGCCATGGGCGCATTCCAG
CCACACCACCTGAACGCCAAAGGCCAGGTTGCCAGAGGGCAGGTCCATGGCTTCCGGATG
TCGCTGTGGTATGAGCACCTTGGAATGCTGCACAACGATTTCGTCAGCCCGGGAAGCCTG
GAGTGTGTCCAGAGGGTGAACAAGATGGCTGACAAGTACTGGGACCTCTATGCTAGTGAT
GAACTGAACGACGACCTCCCTGGGCACCTTCTCACCTACCCGGTTGCCGTGACAAAGGAC
GGCACGGTGACGGAGCTGCCCGGTGCGAGGTGCTTCCCCGACACGCAGGCTCCGGTGCTT
GGAATCAAATCCAAACACCTGCCCCCTATTCTCACCACATAGGATGCATTTGCATAGTTG
CAACCTCGGCAATGCTAGATGATGCTTCTAGCTAGATATGATGCGCTTCCCGCACTGTAA
GCTTATTCTATTGTTGCTACCTCTATATGATGGTTCTAGTCAGAGTCTATAGCTGATCGT
CTTACCTAAAGCCTGAACATTCTGCTGGCTAGCCTTGGTCTGTCTTGCAAGATGCATACT
TGAGAGTACTGAAGCTTGAAGATTTGGCAATGCTTCATCTCAGATTTGACTGAGTGCTAC
CTATAGTTGCTAGTGTTGCGTGTCGTCTCAACAATTGTTAGGGTTTGTCTCTTGGATTCC
CAGACAGCTTTTGGAAGCTGAACACATGGCCTATGTTTTCGACAAAAAAAAAAAAAAAAA

Homology of Contig U35_14131 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g40190.1	818	8e-110	protein\|phospholipase D, putative, expressed
Brachypodium v1_2	Bradi1g36580.1	824	7e-120
Arabidopsis v10	AT1G52570.1	810	2e-93	\| Symbols: PLDALPHA2 \| phospholipase D alpha 2 \| chr1:19583940-19586551 REVERSE LENGTH=810