barSeed - Barley Seed Development Database

Probe CUST_30694_PI390587928

Source Contig U35_19706

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30694_PI390587928	Hv_44K_v2	TCATGCTCTCTTACTGTGATTGGATGAGAGCATTTTGTGCTTTCTGTTAATAAAAGTGAT	1207	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367531	1192	2e-24	1126 - 1185	100	60 / 60	plus	ABC12595
MLOC	MLOC_68397.1	908	3e-22	853 - 908	100	56 / 56	plus	ABC12595
JLOC1	JLOC1_45253.1	1087	8e-25	854 - 913	100	60 / 60	plus
Harvest21	ABC12595	1231	3e-25	1150 - 1209	100	60 / 60	plus	ABC12595
Harvest35	U35_19706	1289	3e-25	1208 - 1267	100	60 / 60	plus

Contig Sequence (1289 bp)

>U35_19706 1289 Hv_44K_v2
TCTTTGTACCTTTTTTTTTTCGTTCTACTCTTCGGCTGGGCAGCTATTACCCCATCGCCG
CATCGCGCCTGGCGAGAGCCCCCGCGGAGCGATCGGCCATGGCGGCTTCCCTCCGAGCGT
CGTCCTCCTCCTCCCTCCGCTCGAGCCTCCTCTCCTCCCCCGCCGCATGGTCTCCCTGGC
GCCTGCTCCTCTCCTCCCCCGTCCACTCGGACGCCGCCCACCAGACCGAAACCCTCGCCT
TCCACGAGATCCAGCTCTCCCCGGAGAAGCCGCCCACCGCCACCGCCTTCGTCCTCCACG
GCCTCCTGGGCTCCGGCCGCAACTGGCGCACCTTCTCCCGCACCCTCGCCTCCCAGCTCC
GCGACCGCTCCCCCTCCGACGAGTGGAAGATGGTTCTTGTGGATTTGAGGAACCATGGGA
GCTCAGCCAGGATCAAAGGGCTGGGCCCACCCCATGATATGTCGAGTGCGGCCAGGGATC
TCGCTGATTTGGTGAAGGCCCGGGGCTGGACATGGCCGGATGTCGTCGTGGGTCACTCCA
TGGGTGGAAAGGTCGCACTGGATTTTGCGGAGAGTTGCTCCCGTGGCGATTATGGAGAAT
CTGCTGCTCTTCCCAAACAGCTCTGGGTGCTTGATTCTGTCCCCGGAGAAGTAAAAATAG
ATAACAGTGACGGTGAAGTTGAGCGGGTTTTGCAAACACTAGCAAGTCTTCCTTCATCGC
TTCCATCGCGCAAGTGGGTTGTGGACCACATGGTCAGCCTGGGATTCTCCAAGTCACTTT
CAGACTGGATTGGCAGCAACTTGAAGAAGGACAATGAACATGTGACCTGGGCTTTTGATC
TTCAGGCTGCCACAGACATGTTTAATTCTTACAGAGATAGAAGCTACTGGGCACTGCTGG
AGAACCCACCAAAGGGTTTGGAGATCTCAATAGTACAGGCAGAGCTCAGTGATAGATGGC
ACCCTGATGATGTCCAGAGGCTAAAAGCACTATCAAGGAGAGGCAGAAAACCTGACGTGG
GGAAAGTGTCACTCCACGTCCTCCCCAACTCCGGCCATTGGGTTCACGTGGACAACCCCA
AGGGGCTGCTCGAGATCATGGCGCCTAACTTCCTCTCCGCTGTTCAAAATTGACCTGTTA
TTTTACTGTCAACTCCAGCCTTGTGACAGTGCATCTTGTCGCGTTTGATCACACGAAAGA
TACTTATTCATGCTCTCTTACTGTGATTGGATGAGAGCATTTTGTGCTTTCTGTTAATAA
AAGTGATTTGATCAAAAAAAAAAAAAAAA

Homology of Contig U35_19706 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g64262.2	187	1e-87	protein\|hydrolase, alpha/beta fold family, putative, expressed
Brachypodium v1_2	Bradi2g55740.1	344	0.0
Arabidopsis v10	AT3G52570.1	335	2e-143	alpha/beta-Hydrolases superfamily protein \| chr3:19501145-19502795 FORWARD LENGTH=335