barSeed - Barley Seed Development Database

Probe CUST_30688_PI390587928

Source Contig U35_1052

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30688_PI390587928	Hv_44K_v2	AGCATCATCTCCTATCCACAGAATCTTGGATTAATAGAGGAATCCAAGATTTCAAGAACA	594	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361743	2120	2e-24	1743 - 1802	100	60 / 60	plus	ABC03235 ABC25388 ABC31592
Harvest21	ABC03236	661	3e-25	595 - 654	100	60 / 60	plus
Harvest35	U35_1052	661	3e-25	595 - 654	100	60 / 60	plus

Contig Sequence (661 bp)

>U35_1052 661 Hv_44K_v2
GGTGCCGCCGCCGGCAAGAAAAAATTGCGATAGTATTTGAAGCCTGGGAACGAAACACAG
AAGCGTCGGAAGGGGAGGGCGAGAGGAAGGAGCAGGGGAGGGCGAGAGGAAGGAGCAGGG
GCAGACGAGCAGGCGCGAGGGGCGAGAGATGGGGATCTGGTTCGTGCTGCTGGTGAACAA
GCAGGGGAGACGCGGCTGGCGCAGTACTACGAGCACCTCTCCCTCGACGAGCGCCGCGCC
CTCGAGGGCGAGATCGTCCGCAAGTGCCTCGCCCGCACCGACCAGCAGGAGCCCTGGCTT
CGTCTTGACCCCGAATCAAGAACGGCGTTTCTTTGGATCTGGATCAGGATGGGCTGTTGT
TGGCCTCGATTTCCATGTCCGTCTCACGGGAACTCTGTGCCAATGCAGTGCTCTTTCGTG
GAGCACCGGAACTACAAGGTCGTCTACAGGCGCTACGCCTCCCTCTTCTTCCTCGTCGGC
GTGGACAACGATGAGCAACCGAGCTGCTGCATTTCTGCAGCTGGTTAAGCTTAATAAGGC
ACTTGCTGATGCTGAGATGACAATAAAACTCAAGCCAGAATGGTAGCACCTAAGAGCATC
ATCTCCTATCCACAGAATCTTGGATTAATAGAGGAATCCAAGATTTCAAGAACATTACCT
T

Homology of Contig U35_1052 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None