barSeed - Barley Seed Development Database

Probe CUST_3067_PI390587928

Source Contig U35_23602

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3067_PI390587928	Hv_44K_v2	TTAGATCCCGTCAAGATTTATTATGTCAACGAGGGCAAATGCAGATAGCATTATCTTGTG	478	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_28187.2	686	2e-24	94 - 153	100	60 / 60	minus	ABC09967 ABC11693
MLOC	MLOC_28187.1	1323	2e-24	126 - 185	100	60 / 60	minus	ABC09967 ABC11693
MLOC	AK357948	1562	7e-23	1392 - 1451	98	59 / 60	plus	ABC09967 ABC11693
JLOC1	JLOC1_18945.1	1384	8e-25	1144 - 1203	100	60 / 60	plus
Harvest21	ABC19467	541	3e-25	479 - 538	100	60 / 60	plus
Harvest35	U35_23602	541	3e-25	479 - 538	100	60 / 60	plus

Contig Sequence (541 bp)

>U35_23602 541 Hv_44K_v2
GACTGCCTTGCCAACAAGGAGCCAACCGAGTGTTTCTTCCCCGCAGAGCTTATTAAGAGC
ACCCGCACCCCCATGTTTATTCTCAACTCTGCGTATGATTCATGGCAGGTACGGAATGTT
CTTGTACCAGTTTCGTCGGCTCCTGATAAGTCATGGTCGAGTTGCAAGGATAATATCCGG
AACTGCAATTCCACACAAATCAAAGTCCTCAATGGCTTCAGGAACACAATGGTGGGTGCA
TTGAATGTTGTCGAAGATAAGGAGGACTGGGGATTGTTCATCGATTCATGCTTCACACAC
TGTCAATCCCTATATGGCATCTCCTGGAATTCAGAAATCTCCCCGAGGCTTGGAAATAAG
ACCATTGCAGAGGCCGCAGGAGATTGGTACCATGGAAGGAGCCAAGGAGTGAAAGAGATA
GACTGCGAGTATCCATGCAACCCAACATGCAGCGGACAGTTGCCTCCATGATTTATTATT
AGATCCCGTCAAGATTTATTATGTCAACGAGGGCAAATGCAGATAGCATTATCTTGTGAT
G

Homology of Contig U35_23602 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g66850.1	403	4e-79	protein\|pectinacetylesterase domain containing protein, expressed
Brachypodium v1_2	Bradi2g62420.1	314	4e-91
Arabidopsis v10	AT3G09410.1	427	4e-58	Pectinacetylesterase family protein \| chr3:2898243-2900984 REVERSE LENGTH=427