barSeed - Barley Seed Development Database

Probe ABC11693

Source Contig ABC11693

barSeed

Links

Affymetrix Source Sequence (1342 bp)

>ABC11693 1342
AGATATGGCGCCAAGCAACGTACCAGAGGCACTGCTCCGGCTCCTGCTGCTGGCCGCTTC
CGGCCTTCTCGGTCCTATGCTATCCGGCGCAGCGCCGGTCGAGCCCGTCGAGGTCAGCCT
CCTCGTCGGCGCACAGGAAAAGGGAGCAGTGTGCTTGGACGGGACCCCGCCGGGGTACCA
CCTGCAGAGAGGCTCCGGTGATGGATCCGGCAGCTGGCTCATCCATCTAGAGGGAGGAGG
CTGGTGCAGCACACTCAAGGATTGTTCCGGTCGCAGAATGTCTGTTCTTGGTTCATCAAA
CTTCATGAAACCACTACAGTTTGCCGGTCATGGGATTTTTGACAGTGATGAGATATATAA
TCCTGATTTCTACAACTGGAACAAAGTCTATGTACGGTATTGCGATGGGGCATCATTTGC
CGGGGATGCAGAAGGTCAAGCGCAGGATGGAACCACAGTTTACTTCAGAGGGTTGCGCAT
CTATGAAGCAATTACTGACGAACTCATGCAAAAAGGCCTCGTCAATGCTACACAGGTGCT
CTTTACAGGTTGTTCTGCCGGAGGTCTAGCCACGATACTGCACTGCGATGATTTTAGTGC
ACGGTTTCCTCAGCAGGTTTCAGTTAAATGCTTTGCGGATGCTGGGTTTTTTCTTGACGT
AAAGGATATATCTGGAGAAAGGTCCTTTTGGTCTTTATACAACCGAGTTGTGCAGCTCCA
GAATGTTAGACAAGTGTTGCACAAGGACTGCCTTGCCAACAAGGAGCCAACTGAGAGATT
ATTAAGAGCATCCGCACCCCCATGTTTATTCTCAACTCTGCGTATGATTCATGGCAGATA
CAGAACGTTCTCCTACCGAGTTCATCTTCTCCAGAAAAGTCATGGTTGAGTTGCAAGGAT
AATATCGGAAACTGCAACTCAACCCAAATTAAAGTTCTTGATGAATTCAGGAATACAATG
ATCAATGATTTGAACATCGTCGAAGATAAGGCAGGATGGGGCATGTTCATTGATTCATGC
TTCACTCACTGCCAAACGCTCTTTCGCATCTCTTGGAATTCACCAACATCCCCAAGGCTT
GGAAATAAGAACATTGCAAAGGTTGTTGGAGATTGGTACTTTGGAAGGAGCCAAGGAGTG
AAAGAGATTGACTGCCAGTATCCGTGCAACCCAACATGCAATAGTCTCCCACCTCCATGA
TTTGCTACTACCCCCTCCGACCCATATTAATTGATGCTGCCTTAGTAGGAAGTTGTACTA
AAACATCATCAGTTAATATGGATTATTGGAGGGAAGTATACTGGATTGTGTTAATATTCA
CTATTAAAGATTCAAGAAAAAC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_60802.5	1520	0.0	19 - 1376	99	1339 / 1359	None	ABC09967 ABC11693
MLOC_60802.1	1596	0.0	149 - 1506	98	1327 / 1359	None	ABC09967 ABC11693
MLOC_60802.3	1518	0.0	14 - 459	98	439 / 446	None	ABC09967 ABC11693
MLOC_60802.2	1368	0.0	946 - 1368	99	419 / 423	None	ABC09967 ABC11693
MLOC_60802.4	1605	8e-111	529 - 746	100	218 / 218	None	ABC09967 ABC11693
AK357948	1562	0.0	201 - 1364	83	965 / 1169	CUST_3067_PI390587928 CUST_2537_PI390587928	ABC09967 ABC11693
MLOC_28187.1	1323	0.0	213 - 1291	84	904 / 1081	CUST_3067_PI390587928 CUST_2537_PI390587928	ABC09967 ABC11693
AK249055.1	2191	9e-61	681 - 808	100	128 / 128	None	ABC09967 ABC11693
AK365666	3634	0.0	1472 - 2579	83	922 / 1111	CUST_35103_PI390587928 CUST_23093_PI390587928	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC09942 ABC09967 ABC11693 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
AK354002	1661	0.0	241 - 1348	83	922 / 1111	CUST_23091_PI390587928 CUST_23093_PI390587928	ABC09967 ABC11693
MLOC_55103.1	1322	0.0	281 - 1322	83	868 / 1045	CUST_23091_PI390587928 CUST_23093_PI390587928	ABC09967 ABC11693
MLOC_55102.5	1677	0.0	196 - 1393	80	971 / 1209	None	ABC11693
MLOC_55102.6	1514	0.0	159 - 1359	80	972 / 1212	None	ABC11693
MLOC_55102.3	1200	0.0	196 - 1192	81	812 / 1008	None	ABC11693
MLOC_60802.6	885	1e-53	453 - 567	100	115 / 115	None	ABC11693
MLOC_55103.2	1352	3e-95	960 - 1350	83	325 / 392	CUST_23093_PI390587928	ABC09967 ABC11693
MLOC_55102.1	1154	8e-171	260 - 1043	81	638 / 788	None	ABC11693
MLOC_55103.3	738	4e-169	36 - 738	82	580 / 704	None	ABC09967 ABC11693
MLOC_60802.7	1059	2e-82	852 - 1021	99	169 / 170	None	ABC09967 ABC11693
MLOC_55102.8	1563	1e-63	1 - 326	80	263 / 327	None	ABC11693
MLOC_55102.9	1565	2e-62	1 - 328	80	264 / 329	None	ABC11693
MLOC_28187.2	686	2e-112	181 - 658	83	397 / 480	CUST_3067_PI390587928	ABC09967 ABC11693
MLOC_55102.2	1172	9e-71	196 - 560	80	293 / 366	None	ABC11693
MLOC_55102.4	1448	8e-91	196 - 632	81	354 / 439	None	ABC11693
MLOC_55102.7	902	1e-63	1 - 325	80	262 / 326	None	ABC11693