barSeed - Barley Seed Development Database

Probe CUST_30665_PI390587928

Source Contig U35_1065

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30665_PI390587928	Hv_44K_v2	GTGGAAACTCTGAGACAATTCCTGCTGTTTTACAGCAATTATGTTAAACTTGATTTGAGC	1134	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372087	2659	2e-24	2600 - 2659	100	60 / 60	plus	ABC03454 ABC03456 ABC03457 ABC16873 ABC31801
Harvest21	ABC03457	1217	3e-25	1101 - 1160	100	60 / 60	plus	ABC03457
Harvest21	ABC31801	519	1e-23	41 - 100	98	59 / 60	minus	ABC31801
Harvest35	U35_1065	1240	3e-25	1135 - 1194	100	60 / 60	plus
Harvest35	U35_1062	536	6e-22	433 - 492	97	58 / 60	plus

Contig Sequence (1240 bp)

>U35_1065 1240 Hv_44K_v2
TCGAGCACTGTTGGCCTGGCTCACCCCTCACCCCTCTCCAAAACCCTAAACCCTCCCCCG
GCGGCGGCGGCGGCGGCTACCAGCACCACACGACCCACACACCATGAGGGCTCCCATGAG
AGGAGGAGGAGGGCGCGGCGGTGGCAGGGGCTTCGGCGACAGCGGTGGCCGCGGGCGCGG
GCGCGGCTTCGGTGGAAGGAGCGACGGTGGCGGCCGCAGCGGTGGTAGGGGGTTCGGAGG
CCGCAGCGGCGGCAGGGGCCGTGGCGGCGGCAGGGGTGGGGGAAGGGGTGGCCCCGGCAT
GAAGGGCGGTGCCAAGGTGGTCGTCGTGCCCCACAAGCACGACGGCGTCTTCATCGCCAA
GGCCAAGGAGGACGCGCTCTGTACCAAGAACATGGTCGCCGGCGAGTCCGTCTACGGCGA
GAAGAGGGTCTCCGTCCAGAATGAGGATTCATCCAAGGTCGAGTACAGGGTGTGGAACCC
CTTCAGGTCCAAGCTGGCTGCTGCCGTGCTAGGTGGTGTGGACAACATCTGGATTGCTCC
TGGAACTCGTGTGCTGTATCTTGGAGCCGCTTCTGGAACAACCGTGTCTCATGTGTCTGA
CATTGTTGGACCGACTGGGTTGGTGTATGCTGTTGAGTTCTCTCACCGGAGTGGCAGGGA
TCTTGTCAACATGGCCAAGAAGAGGACCAATGTCATCCCCATCATCGAGGATGCTAGGCA
CCCGGCCAAATACCGGATGCTGGTTGGCATGGTTGATGTTATCTTTTCTGATGTTGCACA
GCCTGACCAGGCTAGAATCTTAGCCCTTAACGCATCATACTTCTTGAAGAATGGCGGCCA
CTTTGTCATTTCCATCAAGGCAAACTGTATCGACTCCACCCAGGCTGCTGAGGCCGTGTT
TGCGAGCGAAGTGGAGAAGCTCAAGGCCGACCAGTTCAAGCCATCGGAGCAGGTGACCCT
GGAGCCCTTCGAGCGCGACCACGCCTGCGTCGTCGGTGGTTACAGGATGCCCAAGAAGCA
AAAGTGAAGTTGAGGAGAAGAAGAATAGAAGTGGCCTTGTTGTTTCTGCAATCTGCTTTT
GCTCAGATGTACTAGTAGCAGTAGTGGTAATGTGACCCAAGTGTATGGGGTTTTGTGGAA
ACTCTGAGACAATTCCTGCTGTTTTACAGCAATTATGTTAAACTTGATTTGAGCAGAAAA
TAAAAAAAAAACTGTTCAATATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_1065 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g08360.1	310	3e-165	protein\|rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed
Brachypodium v1_2	Bradi1g32010.1	303	5e-168
Arabidopsis v10	AT5G52470.1	308	3e-151	\| Symbols: FIB1, FBR1, ATFIB1, ATFBR1, SKIP7 \| fibrillarin 1 \| chr5:21294290-21296509 FORWARD LENGTH=308