barSeed - Barley Seed Development Database

Probe CUST_30649_PI390587928

Source Contig U35_1071

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30649_PI390587928	Hv_44K_v2	AATACCACGAGCTTCATTGATCTCTCTAACATGGGGACGCCAGCTGCCGGATCGTTCGCC	0	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.942	0.787	0.697	0.626	1.302	1.159
Raw	2.766	2.569	3.277	4.354	2.885	3.039

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356936	1094	2e-24	19 - 78	100	60 / 60	plus	ABC03674 ABC03675 ABC03676
MLOC	MLOC_76682.1	1214	2e-24	953 - 1012	100	60 / 60	minus	ABC03674 ABC03675 ABC03676
JLOC1	JLOC1_51139.1	1368	8e-25	210 - 269	100	60 / 60	plus
Harvest21	ABC03676	1051	6e-22	1 - 54	100	54 / 54	plus	ABC03676
Harvest35	U35_1071	703	3e-25	1 - 60	100	60 / 60	plus

Contig Sequence (703 bp)

>U35_1071 703 Hv_44K_v2
AATACCACGAGCTTCATTGATCTCTCTAACATGGGGACGCCAGCTGCCGGATCGTTCGCC
CGGTTCCTTGCGTTGTTCGCCGCCGCGACGTGCCTGCTCTGGAGCACGGCGTCCGGCTTC
TCCGCGTCCGGCGTCAGCAGGGCCTTCGCCACCTTCTATGGCGGCAGCGACGCCTCAGGG
ACCATGGGTGGGGCGTGCGGGTACGGGAACCTGTACTCGACGGGGTACGGCACGAGCACG
GCGGCGCTGAGCACGGCGCTGTTCAACGACGGCGCGTCATGCGGGCAGTGCTACCGGATC
AGGTGCGACTACGCGGCGGACCCGCGGTTCTGCATCCGCGGCGCCTCCGTCACCATCACG
GCCACCAACCTCTGCCCGCCCAACTACGCGCTCCCCAACGACGACGGCGGCTGGTGCAAC
CCGCCGCGGCAGCACTTCGACATGGCGGAGCCGGCATGGCTCAACATCGGCGTCTACCGC
GGCGGCATCGTGCCGGTCCTCTACCAGCGCGTGCCCTGCGCCAAGAAGGGCGGCGTCAGG
TTCACCGTCAACGGCCACGACTACTTCGAGCTCGTGCTCGTCAGCAACGTCGGCGGCGTG
GGTTCATCCGGTCGGTGTCCATCAAGGGGTCGCGCNACGGGTGGATGCCATGTCCAGGAA
CTGGGGGGTCAACTGGCAGTCCAACGCGCTGCTCAGCGGGCAG

Homology of Contig U35_1071 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g15840.1	262	1e-100	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi5g04120.1	262	2e-106
Arabidopsis v10	AT1G20190.1	252	5e-88	\| Symbols: ATEXPA11, EXP11, ATEXP11, ATHEXP ALPHA 1.14, EXPA11 \| expansin 11 \| chr1:6998762-6999710 REVERSE LENGTH=252