barSeed - Barley Seed Development Database

Probe CUST_30648_PI390587928

Source Contig U35_1072

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30648_PI390587928	Hv_44K_v2	CGAGTTGGAGTCAACCTTCATGATGGACAATATGCAAAAAGTTTCATCAAATTTAAACCT	612	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.402	1.740	0.694	0.539	1.234	1.099
Raw	13.424	12.227	4.016	3.068	2.769	2.746

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356936	1094	7e-23	1027 - 1086	98	59 / 60	plus	ABC03674 ABC03675 ABC03676
Harvest21	ABC03676	1051	1e-23	928 - 987	98	59 / 60	plus	ABC03676
Harvest35	U35_1072	736	3e-25	613 - 672	100	60 / 60	plus

Contig Sequence (736 bp)

>U35_1072 736 Hv_44K_v2
CCGCGGTTCTGCATCCGCGGCGCCTCCGTCACCATCACGGCCACCAACCTCTGCCCGCCC
AACTACGCGCTCCCCAACGACGACGGCGGCATCGTGCCGGTCCTCTACCAGCGCGTGCCC
TGCGCCAAGAAGGGCGGCGTCAGGTTCACCGTCAACGGCCACGACTACTTCGAGCTCGTG
CTCGTCAGCAACGTCGGCGGCGTGGGTTCCATCCGGTCGGTGTCCATCAAGGGGTCGCGC
ACCGGGTGGATGCCCATGTCCAGGAACTGGGGGGTCAACTGGCAGTCCAACGCGCTGCTC
AGCGGGCAGAGCCTCTCGTTCCAGGTCACCAGCACCGACGGCCAGACGATCACCTTCCCC
AACGTCGCTCCCGCCGGATGGGGCTTCGGCCAGACCTTCGCCACCAACAAGCAGTTCTCT
TAATTCTCGTAATTAGAGAGGTTTACAAATTAATCTATACTCCAGTCCTTTCTTTTGGGG
TGTACGGTATTTCTTGATCAGTGATCGATGCATAATATTCGATCATCTGCCGGCAGCGTC
GCCGTGAAATCTTCTCCGGACGAGGTGTTGTGTGGGTTTTGTGTTAATCATCCATGCATT
TGGCTCTGCGTCCGAGTTGGAGTCAACCTTCATGATGGACAATATGCAAAAAGTTTCATC
AAATTTAAACCTATGGTTCGAAAGATATGGATTTTCAAAGTTCAAGATGCTTTAAGATTA
AAAAAAAAAAAAAAAA

Homology of Contig U35_1072 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g15840.1	262	1e-67	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi5g04120.1	262	1e-74
Arabidopsis v10	AT1G20190.1	252	4e-55	\| Symbols: ATEXPA11, EXP11, ATEXP11, ATHEXP ALPHA 1.14, EXPA11 \| expansin 11 \| chr1:6998762-6999710 REVERSE LENGTH=252