barSeed - Barley Seed Development Database

Probe CUST_30642_PI390587928

Source Contig U35_29731

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30642_PI390587928	Hv_44K_v2	CTTCCAAAATCTGTTGTGAAACTTCACAATTTGGAAACATTGAATCTTCAAGGTGCAGAG	244	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38340.1	1167	2e-24	191 - 250	100	60 / 60	plus	ABC31234
MLOC	AK363746	4585	7e-23	3342 - 3398	100	57 / 57	plus	ABC13844 ABC17852 ABC31234 ABC41122 ABC44969
JLOC1	JLOC1_24923.1	1733	8e-25	191 - 250	100	60 / 60	plus
Harvest21	ABC29171	566	3e-25	245 - 304	100	60 / 60	plus
Harvest35	U35_29731	566	3e-25	245 - 304	100	60 / 60	plus

Contig Sequence (566 bp)

>U35_29731 566 Hv_44K_v2
GGATTCTCGCCGCTTGTCAGTGCTCCAATGCAAAAATGACACTGAACCAAGCATGGGGCA
ATGCAGGCTTCGTACCTTCACAGCATTTAGCAGCAACATGGCATCATCTGCATTGTTTCC
CTCAGAATCTAAGTACCTTGCTGTGTTGGAGCTATCAAGATTACCAATTGAGACTATTCC
AAATTCAATTGGGGAGTTATTCAACCTTAAGTATTTGGGCCTCGATAAGACCAATGTCAA
GATACTTCCAAAATCTGTTGTGAAACTTCACAATTTGGAAACATTGAATCTTCAAGGTGC
AGAGTGTGTGCATTTGCCAGAAGGGTTTGAGAAGCTGAAGAAGTTGCGGCACCTTCTTAT
TTATAAATGGCTGGATAGAACATGCTCGATTCTCAATTTTTTTGAACCTGTGGATCCGTT
TGAGGGAATGTGGAGTTTGAAAGACTTGCAAACTCTGTCTGCAGTTCGATCTAGTAAAGT
ATTCATTGTCAAACTAGCAAATTTATCTCAGCTGAGGATCCTTCGCATTACTGGGATAAA
GAGCATCCACTGTGCACAACTGTGTG

Homology of Contig U35_29731 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g30220.1	961	5e-61	protein\|disease resistance protein RPM1, putative, expressed
Brachypodium v1_2	Bradi4g06970.1	920	9e-55
Arabidopsis v10	None