barSeed - Barley Seed Development Database

Probe ABC31234

Source Contig ABC31234

barSeed

Links

Affymetrix Source Sequence (558 bp)

>ABC31234 558
GCCACATGTCAACCAAATATACATACACGAGGGATCTTTGGTCCGCCTTGAAGAACTTCG
GATTAGAAACCTGGCCGAACTGCGGGACACCCCTGCCGGCCTGGAACATCTGAAGTCACT
CAAAGGGGTGCGGTTTCTTGACATGCATCCTGATTTTGAAAAGAACTTTCCAGTGGCAAA
ACTAGAGCATGTCCCGAAAGTTCGCTGCACCATACGATACGAAGAGGAGTGAGTCTTTCT
TGCGTGGATGGGGTTTGCAATTATCGCCATCAATGTGGGAGCTATGTACGTGGAATGGCG
ATTTTTATGACGCAACTTTCATTCTTGTTTCTTTTATCGATCTCTGCTTATATTTAGGAA
CGGAGGGAGTAATAAAGTATGGGAAAGATGTGTATTACTGCTATCCCATCTTTTTTTATA
TTATTATCTAAGTTTATTTATAGTTGCACTAAGCTACCGCATGGGACAACTATTATGTAT
TTCTACACAGCGATTCATGTAATAATGCCGAAACATTCAGATACATGATGTGCACGTATT
TAAGAGAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_38340.1	1167	9e-162	859 - 1167	100	309 / 309	CUST_30642_PI390587928	ABC31234
AK363746	4585	2e-114	4010 - 4569	81	466 / 577	CUST_30642_PI390587928	ABC13844 ABC17852 ABC31234 ABC41122 ABC44969
MLOC_39708.1	1305	2e-104	858 - 1295	83	373 / 450	None	ABC31234
MLOC_38341.1	266	6e-99	1 - 196	100	196 / 196	CUST_24857_PI390587928	ABC31234
MLOC_39708.2	1555	4e-80	858 - 1073	92	198 / 216	None	ABC31234