barSeed - Barley Seed Development Database

Probe CUST_30639_PI390587928

Source Contig U35_29734

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30639_PI390587928	Hv_44K_v2	AACCTTGATTCCTCCGTATGCTCCAATAGTATAGTATAGTGCCGTATCCCGTCATTGCCA	253	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74565.4	3870	2e-24	3128 - 3187	100	60 / 60	minus	ABC12572
MLOC	MLOC_74565.1	3553	2e-24	2780 - 2839	100	60 / 60	minus	ABC12572
MLOC	MLOC_74565.2	3819	2e-24	3046 - 3105	100	60 / 60	minus	ABC12572
JLOC1	JLOC1_49698.2	3275	8e-25	340 - 399	100	60 / 60	plus
JLOC1	JLOC1_49698.1	3541	8e-25	340 - 399	100	60 / 60	plus
Harvest21	ABC29174	411	3e-25	254 - 313	100	60 / 60	plus
Harvest35	U35_29734	411	3e-25	254 - 313	100	60 / 60	plus

Contig Sequence (411 bp)

>U35_29734 411 Hv_44K_v2
GCAGCCAGGGAGAGGAGAGGAGAGGAGAGGACTGGACCGCGCACTAGTTGGGAGTATCGT
GGAGGTTGTAGGTGGACGGGCCCCCACCACACGTGACACGTCTCCGCAATCCACTCGGTG
ATGCCCACCATGTTTTGTTCTCCTCGGATATGTATGGACTAGGACTATGCCTTTTCTTCA
TTCTTCTCCTCCTCCCCTGTCTATCTTCTTCCTCGATCTCTTCGTCCCCTTCTTCCCCCC
TTCAAAAAACACTAACCTTGATTCCTCCGTATGCTCCAATAGTATAGTATAGTGCCGTAT
CCCGTCATTGCCAGCCCCCGCTTCTTTCGAGGTGTCTTTCGTCTGCGTGCGTGCCAATCT
TGCTCTCGGCGGGTGGCTCAATCCGTTCGACAAATAACAGTGCTGCTTTTA

Homology of Contig U35_29734 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None