- Probe CUST_30636_PI390587928
- Source Contig U35_29737
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30636_PI390587928 | Hv_44K_v2 | TTCTGCACTCCCTGATCCCTTCCAACGACCGAAAAAAGGAGAAAGAGACGAGCGACGGCC | 241 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.030 | 1.611 | 0.769 | 0.689 | 1.175 | 2.194 |
| Raw | 8.095 | 22.548 | 8.945 | 11.842 | 7.420 | 16.149 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK370352 | 751 | 2e-24 | 268 - 327 | 100 | 60 / 60 | plus | ABC12031 |
| Harvest21 | ABC29178 | 426 | 3e-25 | 242 - 301 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC12031 | 1184 | 5e-23 | 278 - 337 | 98 | 59 / 60 | plus | ABC12031 |
| Harvest35 | U35_29737 | 426 | 3e-25 | 242 - 301 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_5425 | 1376 | 5e-23 | 278 - 337 | 98 | 59 / 60 | plus |
Contig Sequence (426 bp)
>U35_29737 426 Hv_44K_v2 CTGCTGCTGGACGCCAAGACATACATGAGTGGAGGGAGTGGATCAAGGAAGAAAGCACTG TACCACTAGCAGCAAGTAAGAAGAGAGCTTGCCCAGCGGAAGAAACCGACCAAGGAGCGG CAGAGAATGCGGCCAAGGGCGCGCCGTGTCTGAGCTGTACGGTGATCCGTCAGCCTGATG GGCCCTGCGTCAGCCCACCCGCCCCTCTCGCCCACTCTCCTGAGCCGGAGGAGCCCCCCA TTTCTGCACTCCCTGATCCCTTCCAACGACCGAAAAAAGGAGAAAGAGACGAGCGACGGC CGGAGGAGGAGGAGGAGGCTGGCCCTGGCTGGTGGTGTGCGATGGCGCGGCGCGGGCGGG TTGAGCTGCGGCGGATCGAGGACCGGACGAGCCGGCAGGTGCGCTTCTCCAAGCGTCGCT CGGGGC
Homology of Contig U35_29737 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |