barSeed - Barley Seed Development Database

Probe ABC12031

Source Contig ABC12031

barSeed

Links

Affymetrix Source Sequence (1184 bp)

>ABC12031 1184
GAAAACAATGGGCTCGTGCATTCTCTGGGTCGCCGTCGACTCCACGTTTTATCTGCTGCT
GCACACCAAAGCATGAGTGACTGGTGGAGTGGATCAAGGAAGAAAGCACTGTACCACTAG
CAGTAAGAACTAAGAAGAGAGCTTGCCCAGCGGAAGAAACCGACCAAGGAGCGGCAGAGA
ATGCGGCCAAGAGCGCGCCGTGTCCGAGCTGTACGGTGATCCGTCAGCCCACCCGCCCCT
CTCGCCCACTCCCCTGAGCCGGAGGAGCCCCCCCATCTCTGCACTCCCTGATTCCCTTCC
AACGACCGAAAAAAGGAGAAAGAGACGAGCGACGGCCGGAGGAGAAGAAGGAGGCTAGCT
TTTCCGGCGGGCGATGGCGCGGCGCGGGCGGGTTGAGCTGCGGCGGATCGAGGACCGGAC
GAGCCGGCAGGTGCGCTTCTCCAAGCGCCGCTCGGGGCTCTTCAAGAAGGCGTTCGAGCT
GTCGGTCCTCTGCGACGCCGAGGTCGCGCTGCTCGTCTTCTCCCCCGCCGGCAGGCTCTA
CGAGTACGCCTCCTCCAGCATAGAAGGTACATATGACCGCTATCAGGCATTTGCAGGAGC
CGGAAAGGATGTGAGTGAAGGCGGTGCAAGTAACAACAATGATGGAGATCCTTCAAATAT
ACAGTCAAGGCTTAAAGATATTACTTCCTGGTCTCTTCAAAACAATGCTGATGACTCAGA
TGCTAATGAACTGGTGAAACTGGAGAAACTATTGACAGATGCTTTGAAGAAGACAAAATC
CAAGAAGATATTGGCGCAACGAAATAGCGGTGCGGGCACGATTGCGAGTGGCGAGAACTC
CAGAAGGTTTTGAGCAGCCATGTGATGTGCATGCATTTGGTACAAGCAAACCTCTGTTGT
TGATGCCACACTCTTCCCCAGTTATTGGGTATGAAAGAGTTGTGAAGGCTGCTGCTTGCG
AGGTGCAGCAAAGGCATGAGGGGCAAATTCAATAAAAGGGTGGTGGGTTAACTCTTAACA
GCAACAGTGCGTGTGTCCTTGTTATCTGTTGCCTTACCTTTTGTGCTTTCCTAGGGCTGT
GTGTGATGCTCATATTAACATATCAGTCTGCTGTCAGTCTTCACTACACAGGTTATACGC
AACTGAGTGAGAAATCAGTTTATGGGTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_3844.1	919	0.0	72 - 680	100	609 / 609	None	ABC12031
MLOC_3844.2	1140	0.0	72 - 679	100	608 / 608	None	ABC12031
AK370352	751	0.0	3 - 552	90	498 / 555	CUST_30636_PI390587928	ABC12031
MLOC_48497.1	397	7e-166	1 - 317	100	317 / 317	None	ABC12031
MLOC_55758.1	1034	1e-148	371 - 999	83	530 / 641	None	ABC12031
MLOC_13735.2	2052	1e-118	1438 - 1892	84	388 / 462	CUST_12815_PI390587928	ABC12031
MLOC_34072.1	289	9e-100	51 - 289	95	226 / 239	None	ABC12031
MLOC_12290.1	355	2e-91	173 - 355	100	183 / 183	None	ABC12031
MLOC_11210.4	1736	2e-82	455 - 741	86	247 / 287	None	ABC12031
MLOC_12100.1	2390	4e-69	4 - 167	96	157 / 164	None	ABC12031 ABC23472
MLOC_12100.2	1127	4e-69	4 - 167	96	157 / 164	None	ABC12031
MLOC_13735.1	2088	1e-63	1438 - 1669	86	199 / 232	CUST_12815_PI390587928	ABC12031
MLOC_41415.1	152	1e-54	1 - 147	93	137 / 147	None	ABC12031