barSeed - Barley Seed Development Database

Probe CUST_30623_PI390587928

Source Contig U35_29740

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30623_PI390587928	Hv_44K_v2	GTCTAGAAAATGATGTAGGTTTCCTTTTATTATGCTGCCGCGTTCATTACATATGGTATT	28	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366334	2804	2e-24	789 - 848	100	60 / 60	plus	ABC19362
MLOC	MLOC_3531.1	549	2e-24	201 - 260	100	60 / 60	minus	ABC19362
JLOC1	JLOC1_2122.1	547	8e-25	199 - 258	100	60 / 60	minus
Harvest21	ABC29184	444	3e-25	29 - 88	100	60 / 60	minus
Harvest35	U35_29740	444	3e-25	29 - 88	100	60 / 60	minus

Contig Sequence (444 bp)

>U35_29740 444 Hv_44K_v2
GATAAACAAATATCATGATCAAATTTAAAATACCATATGTAATGAACGCGGCAGCATAAT
AAAAGGAAACCTACATCATTTTCTAGACTCAACATGAACTCTGGAAGGCGATCCATATCA
GGAGTGTACTGATCAAGTACAACAAGAAGTCTGGTCAGGTTGCCACCTTGATCAATGTGA
ATAGAGAAGTAGTACTCATTAATCATCTCAGCATTTTCTTTCAGTATCTCAGTGTTCACC
CCTTGACTTGCAGAGACAGGAGTTGATCCGGACGCCGATCCTGGTGTGGTGTCGGGCCGC
CAAGCCATGCAGCGAACGGTGCCGCGACCGACACGAGGCTGCTAAGCGGGGCGGGCGAAC
AGGCACGGGAGGCGCCGGGAGCGCGGCGGCGGCGACGACGCGCACTGAGGTGGCCCTGGC
GGGAGTGGCCGCTGGCGAAAGGTG

Homology of Contig U35_29740 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None