barSeed - Barley Seed Development Database

Probe ABC19362

Source Contig ABC19362

barSeed

Links

Affymetrix Source Sequence (896 bp)

>ABC19362 896
GCCTTGAGCCGTTTTGGGAACTTGCATGCTATAAAACTCATGGAACCAGCTCCACTTCTG
GAGTTGCTGAAAATGGCACTGAAAGATGACTAGCCAATGAGTGATGTAAATGAGAAAGAG
AAACTACAAATTGCACCAAGTGAACACTGAGATACTGAAAGAAAATGCTGAGATGATTAA
TGAGTACTTCTCTATTCACATTGATCAAGGAGGCAACCTGACCAAACTTCCTGTTGTACT
TGATCAGTACACTCCTGATATGGATCGCCTTCCACAGTTCATGTTGAGCCTAGGAAATGA
TATTACCTGGGACGATGATAAAGAGTGCTTCAGAACGGCAGCAGCTGCTATCGGAAACTT
CTATGCGCTTCATCCTCCCATCCTTCCAAATCCATCTGGCAAAGGCATTCAGTTATACAA
GAAAAATAAAGATTGCATGGGAAGTGCTGAACAGGCTGATAACAATTTACCAAGTACAGA
TGAAGATGACATCGATCAAGAGCTGCTTGCGGAAGCAGAGGCAGCATGGGCTCAACGTGA
GTGGACCATCCAGCACGTCTTGTTCCCGTCGATGCGACTTTTCCTCAAGCCCCCTAAGTC
GATGGCAACTGATGGAACGTTTGTCCAGATTGCTTCTCTAGACAAGCTTTACAAGATCTT
CGAGAGATGCTAGCCGACAAGCGGCATGTCGAGAAGGAAGGGAAGAGCGCGACGCGACCG
ACGCCCTTGCCGGTTCCTTCCGGGACGTGTGTATATAATGCGGTGTCACTGTTTTTTTCC
CCCCCCTTTTTTCCGATAGGGCTGTAAATATTTTTGAAGGACGAGCAAAGTTTGCTGGGC
TCCAGCTCAGCCCTGAATTAAGGCAAATGCCGAATATTGGCTCTCTAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK367944	2481	0.0	1591 - 2479	97	866 / 890	CUST_22635_PI390587928	ABC19362
AK366334	2804	4e-67	638 - 802	95	157 / 165	CUST_30623_PI390587928	ABC19362
MLOC_50331.1	409	9e-124	138 - 405	97	261 / 269	None	ABC19362
MLOC_50331.2	490	9e-124	26 - 293	97	261 / 269	None	ABC19362
MLOC_16079.1	267	7e-95	12 - 267	91	234 / 256	None	ABC19362
MLOC_46940.1	420	6e-86	96 - 277	98	179 / 182	None	ABC19362
MLOC_67025.1	200	2e-75	19 - 172	100	154 / 154	None	ABC19362
MLOC_67025.3	1252	2e-75	5 - 158	100	154 / 154	None	ABC19362
MLOC_67025.2	1680	2e-75	19 - 172	100	154 / 154	None	ABC19362
MLOC_67025.4	1323	3e-73	1 - 150	100	150 / 150	None	ABC19362
MLOC_3531.1	549	4e-67	247 - 411	95	157 / 165	CUST_30623_PI390587928	ABC19362