barSeed - Barley Seed Development Database

Probe CUST_30616_PI390587928

Source Contig U35_29747

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30616_PI390587928	Hv_44K_v2	TGACGTTTTTATTGATGTTATGTACGCACAGATCAAGGAAACAAATTAAGCAGTGGCACC	8	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356898	4090	6e-24	786 - 844	100	59 / 59	plus	ABC03111 ABC03112 ABC18956
MLOC	AK251160.1	869	6e-24	801 - 859	100	59 / 59	minus	ABC03112
JLOC1	JLOC1_39255.1	827	3e-24	627 - 685	100	59 / 59	minus
Harvest21	ABC29192	522	3e-25	9 - 68	100	60 / 60	minus
Harvest21	ABC03112	949	1e-24	837 - 895	100	59 / 59	minus	ABC03112
Harvest35	U35_29747	522	3e-25	9 - 68	100	60 / 60	minus
Harvest35	U35_15211	962	1e-24	837 - 895	100	59 / 59	minus

Contig Sequence (522 bp)

>U35_29747 522 Hv_44K_v2
TTCCATTTGGTGCCACTGCTTAATTTGTTTCCTTGATCTGTGCGTACATAACATCAATAA
AAACGTCACCGAGACAGTTCATCAAACATTCAACAGGTACAAGCTCGCATGGGTTCATCG
ACGCCAAATCACTTTATCAATCGTCGCACGATGAGCGCTGAAACAGCGACCGAGGAACTG
CAGGCACAAGCCTACAGGAACCACATCACGATGGCCCAGACCGGGTAGATGAAGAGCAGG
AGGATGCCGATGGTGTTGGACCATCCATTGGCCTTCTGGAAGGCCTCCTTGAGGCCTCCT
GACGCCTTGATGTGCTCGTGGAGCAGGTAGCACCCGATGACCAGGCATACGGCGACGCCG
ATGATGAGCCACGAGCCCCTGAAGGTGTCCGCGAAGATGCTGGGGGCGACCGCCGTCAGG
AGGATCAGAGAGCCAGGCAGCTCTAGCCAATCATGGAAGTGGCGCGGAAAGAATATCCGC
AGGACCACAACAACGAACGCGATCCAGCTACCAATCTCCCCC

Homology of Contig U35_29747 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g07440.1	131	1e-56
Arabidopsis v10	None