barSeed - Barley Seed Development Database

Probe CUST_30580_PI390587928

Source Contig U35_29765

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30580_PI390587928	Hv_44K_v2	AGTCTGAACTCTGAAGGCTCCCTCTGTATTCTGCAATGGCAGGAGTCGGAGGAGAAGCCG	8	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68295.1	1117	2e-24	750 - 809	100	60 / 60	minus	ABC07171
JLOC1	JLOC1_45172.1	1106	8e-25	94 - 153	100	60 / 60	plus
Harvest21	ABC29218	484	3e-25	9 - 68	100	60 / 60	plus
Harvest35	U35_29765	484	3e-25	9 - 68	100	60 / 60	plus

Contig Sequence (484 bp)

>U35_29765 484 Hv_44K_v2
AGTCTGAAAGTCTGAACTCTGAAGGCTCCCTCTGTATTCTGCAATGGCAGGAGTCGGAGG
AGAAGCCGGCGAGCTGCAGCTGCTGGGCGCTTGGATGAGCCCCTATGTGATCCGCGTGAA
GGTGGCCCTGCAGATGAAGGGGCTCAGCTACGACTACATCGAGCAGGACCTGCAGCACAA
GAGCGACCTCCTGCTCAGCTCCAACCCGGTGCACAAGAAGGTCCCCGTGCTGATCCACGA
CGGCCGGCCGGTGTGCGAGTCGCTCGTCGTCCTCGAGTACGTCGACGAGGCGTGGGCCGG
GACCGGGCCGCCCCTCCTCCCCGCCGACCCCTACGACCGCGCCGTCGCTCGCTTCTGGGC
CACCTACGTCAACGACACGTTTTTCCCGTCGTGGAGGCCGTTGTTGAGGGCGACGACGGC
GGAGCANAGAGCGGAGGCGTTCGAGAACGTGCTTCCTCAGGTGGAGGCGCTGGAGCGGGC
GTTC

Homology of Contig U35_29765 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g49720.1	238	9e-60	protein\|glutathione S-transferase, putative, expressed
Brachypodium v1_2	Bradi2g47110.1	236	1e-65
Arabidopsis v10	None