- Probe CUST_30441_PI390587928
- Source Contig U35_29246
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30441_PI390587928 | Hv_44K_v2 | ATAATGTTGCTGTGTCCAAATAAAACCGTGTGCGATGTGTGGCAATGGTGTTTGCGTGTG | 675 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK253026.1 | 1501 | 2e-24 | 1247 - 1306 | 100 | 60 / 60 | plus | ABC01244 ABC01246 ABC01247 ABC01249 ABC31028 ABC48413 ABC48525 |
| MLOC | MLOC_59149.2 | 1755 | 2e-24 | 1633 - 1692 | 100 | 60 / 60 | plus | ABC01244 ABC01246 ABC01247 ABC01249 ABC48413 |
| MLOC | MLOC_59149.3 | 1292 | 2e-24 | 1095 - 1154 | 100 | 60 / 60 | plus | ABC01244 ABC01246 ABC01247 ABC01249 ABC48413 ABC48525 |
| MLOC | MLOC_59149.1 | 1848 | 2e-24 | 1588 - 1647 | 100 | 60 / 60 | plus | ABC01244 ABC01246 ABC01247 ABC01249 ABC48413 ABC48525 |
| JLOC1 | JLOC1_38466.2 | 1836 | 8e-25 | 1499 - 1558 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38466.1 | 1305 | 8e-25 | 968 - 1027 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01260 | 915 | 3e-25 | 703 - 762 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01254 | 1509 | 3e-25 | 1238 - 1297 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01244 | 989 | 3e-25 | 712 - 771 | 100 | 60 / 60 | plus | ABC01244 |
| Harvest21 | ABC48413 | 300 | 1e-23 | 154 - 213 | 98 | 59 / 60 | minus | ABC48413 |
| Harvest21 | ABC01252 | 445 | 2e-22 | 151 - 205 | 100 | 55 / 55 | minus | |
| Harvest35 | U35_29246 | 735 | 3e-25 | 676 - 735 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_26 | 987 | 3e-25 | 712 - 771 | 100 | 60 / 60 | plus |
Contig Sequence (735 bp)
>U35_29246 735 Hv_44K_v2 GCACGCTCTCCTCGCCGCCAAGATGTTCGGGTTCGGGCACCACCACAAGGACCAGGCGCC GGCGGCGTCCGGCCCCAACCAGATCTTCAAGATCTACTGCCGGGCCTCCGAGGACTACTG CCTCGCCGTCCGCGACGGCGAGGTCGTGCTCGCCCCCGTCAACCCCAAGGACGAGACCCA GCACTGGCTCAAGGACATGCGCTTCAGCACCACCGTCAAGGACGAAGAGGGCATGCCGGC CTTCGCGCTCGTCAACAAGGCCACCGGCCTCGCCGTCAAGCACTCCATCGGCCAGTCCCA CCCCGTGAAGCTGGTGCCGTTCAACCCGGCGTACCAGGACGCGTCGGTGCTGTGGACGGA GAGCCAGGACGTGGGCAAGGGCTTCCGCTGCGTGCGCATGGTGAACAACATCTACCTCAA CTTCGACGCCTTCCACGGCGACAAGGCCCACGGCGGCGTCCACGACGGCACCGAGGTCGT GCTCTGGAAGTGGTGCGAGGGCGACAACCAGCGCTGGAAGATCCTCCCCTGGTAGATGCT GTACCAGGAGATCTGCTGCATTGCCATCGACACATCGCCATGGATCAGTCCGGGGACAAG CCCCCCCGAGTCGTCGTAGTCGTCGTGTCCGTCCGTCCGTCGTCGTCGTCGTAGTCCTCC TGCTGCTGCTAGCGAATAATGTTGCTGTGTCCAAATAAAACCGTGTGCGATGTGTGGCAA TGGTGTTTGCGTGTG
Homology of Contig U35_29246 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g48490.2 | 344 | 1e-102 | protein|stress responsive protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g17460.1 | 346 | 3e-109 | |
| Arabidopsis v10 | AT2G39050.1 | 317 | 6e-61 | hydroxyproline-rich glycoprotein family protein | chr2:16303427-16305336 FORWARD LENGTH=317 |