barSeed - Barley Seed Development Database

Probe CUST_30438_PI390587928

Source Contig U35_29249

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30438_PI390587928	Hv_44K_v2	TTGAATATGGTGGATATCCTCCTCAGTCCAACTATCTTTTCTTGGGCGATTACGTGGACC	510	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252300.1	1681	2e-24	687 - 746	100	60 / 60	plus	ABC01224 ABC01226 ABC01227
MLOC	AK363796	1758	2e-24	496 - 555	100	60 / 60	plus	ABC01224 ABC01226 ABC01227
MLOC	MLOC_36911.4	1298	2e-24	553 - 612	100	60 / 60	minus	ABC01224 ABC01226 ABC01227
MLOC	MLOC_36911.3	1310	2e-24	563 - 622	100	60 / 60	minus	ABC01224 ABC01226 ABC01227
MLOC	MLOC_36911.1	1617	2e-24	842 - 901	100	60 / 60	minus	ABC01224 ABC01226 ABC01227
MLOC	MLOC_36911.2	1808	2e-24	842 - 901	100	60 / 60	minus	ABC01224 ABC01226 ABC01227
JLOC1	JLOC1_23828.2	1884	8e-25	572 - 631	100	60 / 60	plus
JLOC1	JLOC1_23828.1	1748	8e-25	683 - 742	100	60 / 60	plus
Harvest21	ABC01227	1760	3e-25	479 - 538	100	60 / 60	plus	ABC01227
Harvest35	U35_29249	611	3e-25	511 - 570	100	60 / 60	plus
Harvest35	U35_1933	1190	3e-25	479 - 538	100	60 / 60	plus

Contig Sequence (611 bp)

>U35_29249 611 Hv_44K_v2
CCCCGGGACTGCAGGAATTCGGCCCGAGGAAGGAGAGAGAAAGTGACAGAGAGAGGTAGA
GAGAGAGAGGGAGAGGGGGGAGAGGAGACCCTGACCAATGCCAAGAACAAGAAGAGATCA
GTGAGAAGGCCAGGCGAAAATCCCCACCGGGCGAGAGGAGACGACCACCGGCCTCCTCCG
AGAACAAGAGCAAGAACAAGAAGGAATCCATCCCGGAGCATCCACGAGGGAATAAAGCCG
GAAAGGCAGGCCGAGGAGGAGAAAAAAAAGCTCTTCCGGCGATGGAGAAGGGGATGGATC
CGGCGCTGCTGGACAACATCATCGCCAGGCTGCTGGAGGTGAAGAGCCTCAAGCCCGGGA
AGAACGCGCAGCTGTCCGAGTCGGAGATCAAGCAGCTCTGCGCCGCCTCCAAGGAGATCT
TCCTCGCGCAGCCCAACCTCCTGGAGCTCGAGGCCCCCATCAAAATCTGCGGTGATGTTC
ATGGTCAATATTCTGATCTCCTGAGGCTCTTTGAATATGGTGGATATCCTCCTCAGTCCA
ACTATCTTTTCTTGGGCGATTACGTGGACCGAGGAAAGCAGAGCCTTGAGACAATATGCC
TTCTTTTGGCT

Homology of Contig U35_29249 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g57450.2	317	2e-62	protein\|Ser/Thr protein phosphatase family protein, putative, expressed
Brachypodium v1_2	Bradi3g55620.1	532	4e-65
Arabidopsis v10	AT2G29400.1	318	4e-54	\| Symbols: TOPP1, PP1-AT \| type one protein phosphatase 1 \| chr2:12613789-12615283 REVERSE LENGTH=318