barSeed - Barley Seed Development Database

Probe CUST_30427_PI390587928

Source Contig U35_19665

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30427_PI390587928	Hv_44K_v2	TACACTGGTCGATTTCCTGAAGATCCGTTTCGGCAAACTAGACATTCTGGTGAACAATGC	95	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44772.1	1155	2e-24	760 - 819	100	60 / 60	minus	ABC14123 ABC15204
MLOC	MLOC_44772.2	1321	2e-24	926 - 985	100	60 / 60	minus	ABC14123 ABC15204 ABC40642
JLOC1	JLOC1_29037.1	1414	8e-25	385 - 444	100	60 / 60	plus
Harvest21	ABC14124	605	3e-25	106 - 165	100	60 / 60	plus
Harvest21	ABC27593	532	6e-22	229 - 285	98	56 / 57	plus
Harvest35	U35_19665	595	3e-25	96 - 155	100	60 / 60	plus
Harvest35	U35_28618	532	6e-22	229 - 285	98	56 / 57	plus

Contig Sequence (595 bp)

>U35_19665 595 Hv_44K_v2
ACGAGGGGCGCGGAGGCAGTCGAGAAGCTCAGATCGCTGGGGGTCGCCGACCTCATTTTC
CATCAGCTGGACATCACGGACACTTCCAGCATTGCTACACTGGTCGATTTCCTGAAGATC
CGTTTCGGCAAACTAGACATTCTGGTGAACAATGCCGCAATCGGTGGGGTTGAGTTCCTC
CAAGAACTCGATGCCAGCGAGGAAAAGTTTGCTGGCATGGATTCCGATCAGATGCTCGAA
TGGATGGTGAAGAACGTCCGTGAGCCCATCGACGGTGCAAAGAAAGGCCTGCAGACTAAC
TACTACGGCACGAAGCACGTAACCGAGGCCCTCCTGCCTCTGCTGCAATCTTCTTCCGAT
GGAAGAATTGTGACCATCTCCTCCCAGTTTGGCCTGCTGCGGCTTATCANCAACGAGGAG
GTGAGGCAGGAGTTCAATGACATCGACAACCTGACAGAGGAGAGGCTGGACGAGCTGCTG
GACAAGTTCCTCGAGGACTTCGAGGCCGACGCGCTGGAGGCGCGCGGGTGGCCCACGGGG
TACTCGGCCTACAAGGTTGCCAAGGCTGCCATGAACGCCTACTCNNAGATGCTGG

Homology of Contig U35_19665 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g44950.1	308	2e-73	protein\|short-chain dehydrogenase/reductase, putative, expressed
Brachypodium v1_2	Bradi5g16621.1	313	8e-81
Arabidopsis v10	None