- Probe CUST_30424_PI390587928
- Source Contig U35_45930
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30424_PI390587928 | Hv_44K_v2 | ATCAAGGTGCTCTTCTGCGGGATCTGCCACACCGACCTCCATATCGTCAAGAACGAGTGG | 238 | GeneList: black MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.584 | 0.909 | 0.933 | 1.382 | 1.293 | 2.492 |
| Raw | 5.086 | 12.827 | 12.398 | 28.277 | 9.634 | 21.089 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_63771.4 | 1532 | 2e-24 | 346 - 405 | 100 | 60 / 60 | plus | ABC04260 ABC13997 ABC43432 ABC49969 |
| MLOC | MLOC_63771.1 | 1554 | 2e-24 | 375 - 434 | 100 | 60 / 60 | plus | ABC04260 ABC13997 ABC43432 ABC49969 |
| MLOC | MLOC_63771.5 | 1587 | 2e-24 | 430 - 489 | 100 | 60 / 60 | plus | ABC04260 ABC13997 ABC43432 ABC49969 |
| MLOC | MLOC_63771.3 | 649 | 2e-24 | 186 - 245 | 100 | 60 / 60 | plus | ABC04260 ABC13997 |
| MLOC | MLOC_63771.2 | 1582 | 2e-24 | 310 - 369 | 100 | 60 / 60 | plus | ABC04260 ABC13997 ABC43432 ABC49969 |
| MLOC | MLOC_71136.4 | 1508 | 3e-21 | 403 - 462 | 97 | 58 / 60 | plus | ABC04260 ABC13997 ABC43432 ABC49969 |
| MLOC | MLOC_71136.2 | 1460 | 3e-21 | 356 - 415 | 97 | 58 / 60 | plus | ABC04260 ABC13997 ABC43432 ABC49969 |
| MLOC | MLOC_71136.3 | 557 | 3e-21 | 347 - 406 | 97 | 58 / 60 | plus | ABC04260 |
| MLOC | MLOC_71136.1 | 827 | 3e-21 | 213 - 272 | 97 | 58 / 60 | plus | ABC04260 ABC13997 |
| JLOC1 | JLOC1_41811.2 | 1723 | 8e-25 | 288 - 347 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41811.1 | 1726 | 8e-25 | 291 - 350 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_47248.1 | 1598 | 2e-21 | 235 - 294 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC45354 | 598 | 3e-25 | 239 - 298 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC04261 | 1093 | 3e-25 | 369 - 428 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC04260 | 1485 | 6e-22 | 180 - 239 | 97 | 58 / 60 | plus | ABC04260 |
| Harvest35 | U35_45930 | 598 | 3e-25 | 239 - 298 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1106 | 1809 | 3e-25 | 369 - 428 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1107 | 1507 | 6e-22 | 198 - 257 | 97 | 58 / 60 | plus |
Contig Sequence (598 bp)
>U35_45930 598 Hv_44K_v2 TCTAAGTGCTGCTAGGACCGACAAGCAGAGCAAGCAGTCATCAATGGCGAAAGGCATGCC TGCCATCGGTTGGGCTGCGAAGGACACGTCCGGTGTCCTCTCCCCCTACAGCTTCTCACG AAGGTCGTCTTCCTCTGTCCAGTCCCTCTCATGCCCCGTGTGTGTCTTGCGCCGATCTGA CGAACTCCTCCACGTTGTGATGCATGATAACAGGGCTCACAAGGACGACGATGTGACGAT CAAGGTGCTCTTCTGCGGGATCTGCCACACCGACCTCCATATCGTCAAGAACGAGTGGGG AAACGCCCTCTACCCCGTCGTCCCCGGGCATGAGATTGTTGGTGTCGTCACAGACGTTGG CCCTGGCGTCAAGAACTTCAAGGCCGGGGACACGGTGGGCGTGGGCTACTTCATCGACTC GTGCCGCTCCTGCGTGAGCTGCAGCAGTGGGCACGACAACCACTGTCCCACGCTTGTCCT CACCTGCAGCGCCGTGGACTACGACGGCGCGACCACCCAGGGAGGGTTCTCCGACGTGCT CGTCGTCGACAAGGGCTACGTCGTCCGCGTGCCGGGAGGCCTGCCCCTGGACGGCGCG
Homology of Contig U35_45930 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os09g23560.1 | 363 | 1e-69 | protein|dehydrogenase, putative, expressed |
| Brachypodium v1_2 | Bradi4g29770.1 | 358 | 1e-78 | |
| Arabidopsis v10 | None |